Gene BMASAVP1_A1768 details

Gene Information

• Locus tag: BMASAVP1_A1768
• ID: 4681427
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei SAVP1
• Kingdom: Bacteria
• Replicon accession: NC_008785
• Strand: +
• Start bp: 1750875
• End bp: 1751519
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 639846033
• Product: hfq protein
• Protein accession: YP_993088
• Protein GI: 121598815
• COG category: [R] General function prediction only
• COG ID: [COG1923] Uncharacterized host factor I protein
• TIGRFAM ID: [TIGR02383] RNA chaperone Hfq

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.00010879
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAATC CTGCAGAATC CCATCCGCAA AACGACTTCA TCAATGCCGC GCGCAAGGAA 
CGCAAGCGCG TCGAAATTTA TCTCGTCAAC GGTATTCGAC TGACGGGTTG CATCGAGTCG 
TTCGACCAGT ATCTGGTGAT GCTGCGCACG CCCGTCGGCC TGCAAGGCAT CTATAAACGC 
GCCATCTCGA CGATCCAGCT CGACACGGGC GGCTCCCGTC CGGGCGGACG CGGCCCGCGC 
GCGGGCGGCG CCCACGGCGG CGGCGGACGC CCCGGCGGAC GCGAAGGCGG CGGTCATGGC 
CCGTACGGCT CGCACGGCGG CTCGCGCGAA CCCCGCGGCG ACGGCGGCGG CTATGGCGCT 
CGCGAATCGC GCGGCGACGG CGGTTATGGC TCCCGCGAAT CGCGCGGCGA CGGCGGTTAT 
GGCTCCCGCG AATCGCGCGG CGACGGCGGC TACGGTTCCC GCGAACCGCG TGGCGACGGC 
GGCTATGGCG CGCGCGAGCC GCGTGAACCG CGCGAGCCCC GCGAGTCTTA CGGCGCGCCG 
CAAGAAGGCG CATCGACGCC GTCCGGCACG CAGGAACGCA ACGGCAACGG CCCGGTGATC 
GTCACGCGCC GTCGCCGTTC GCTCGGCCCG ACCGACGGCC AATAA 

 

Protein sequence

MANPAESHPQ NDFINAARKE RKRVEIYLVN GIRLTGCIES FDQYLVMLRT PVGLQGIYKR 
AISTIQLDTG GSRPGGRGPR AGGAHGGGGR PGGREGGGHG PYGSHGGSRE PRGDGGGYGA 
RESRGDGGYG SRESRGDGGY GSRESRGDGG YGSREPRGDG GYGAREPREP REPRESYGAP 
QEGASTPSGT QERNGNGPVI VTRRRRSLGP TDGQ