Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMASAVP1_A1661 |
Symbol | |
ID | 4679416 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei SAVP1 |
Kingdom | Bacteria |
Replicon accession | NC_008785 |
Strand | - |
Start bp | 1653546 |
End bp | 1656671 |
Gene Length | 3126 bp |
Protein Length | 1041 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639845928 |
Product | multidrug efflux protein |
Protein accession | YP_992987 |
Protein GI | 121600140 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0858494 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCTCGTT TCTTCATCGA TCGCCCGGTG TTCGCATGGG TGATCTCCTT GTTCATCATG CTGGGCGGCA TCTTCGCGAT CCGCGCGCTG CCCGTCGCGC AGTATCCGGA CATCGCGCCG CCCGTCGTCA GCCTCTATGC GACGTATCCG GGCGCGTCCG CGCAAGTCGT CGAGGAATCG GTCACCGCCG TGATCGAGCG CGAGATGAAC GGCGTGCCCG GCCTGCTGTA CACGTCGGCG ACGAGCAGCG CCGGCCAGGC GTCGCTGTCG CTCACGTTCA AGCAGGGCGT GAGCGCCGAT CTCGCGGCCG TCGACGTGCA GAACCGCCTG AAAATCGTCG AGGCGCGGCT GCCCGAGCCC GTGCGGCGCG ACGGCATCTC GATCGAGAAG GCGGCCGACA ACGCGCAGAT CATCGTGTCG CTCACGTCGG AGGACGGACG GTTATCGGGC GTGGAGCTCG GCGAATACGC GTCGGCGAAC GTGTTGCAGG CGCTGCGGCG CGTCGAGGGC GTCGGCAAGG TGCAGTTCTG GGGCGCCGAG TATGCGATGC GGATCTGGCC GGACCCCGTG AAGATGGCGG CGCTCGGCCT GACGGCGTCC GATATCGCGT CGGCCGTGCG CGCGCACAAC GCGCGCGTGA CGATCGGCGA CGTCGGCCGC AGCGCGGTGC CCGACAGCGC GCCGATCGCG GCGACCGTGC TCGCCGACGC GCCGCTCACG ACGCCCGACG CGTTCGGCGC GATCGCGCTG CGCGCGCGCG CCGACGGCTC GACGCTGTAC CTGCGCGACG TCGCGAGAAT CGAGTTCGGC GGCAACGATT ACAACTACCC GTCGTTCGTG AACGGCAAGA CGGCGACGGG CATGGGCATC AAGCTCGCGC CCGGTTCGAA TGCGGTCGCC ACCGAAAAGC GCGTGCGCGC GACGATGGAG GAGCTCGCGA AGTTCTTTCC GCCGGGCGTC AAGTACCAGA TTCCGTACGA GACGGCGTCG TTCGTGCGCG TGTCGATGAG CAAGGTCGTC ACGACGCTCG TCGAGGCGGG CGTGCTCGTG TTCGCGGTGA TGTTCCTCTT CATGCAGAAC TTCCGCGCGA CGCTGATTCC GACGCTCGTC GTGCCCGTCG CGCTGCTCGG CACGTTCGGC GCGATGCTCG CCGCGGGCTT CTCGATCAAC GTGCTGACGA TGTTCGGGAT GGTGCTCGCG ATCGGCATCC TCGTCGACGA CGCGATCGTC GTCGTCGAGA ACGTCGAGCG GCTGATGGTC GAGGAGAAGC TGCCGCCGTA CGAGGCCACC GTGAAGGCGA TGAAGCAGAT CAGCGGCGCG ATCGTCGGGA TCACCGTCGT GCTCACGTCG GTGTTCGTGC CGATGGCGTT CTTCGGCGGC GCGGTCGGCA ACATCTACCG GCAGTTCGCG TTCGCGCTGG CGGTGTCGAT CGGCTTCTCG GCGTTTCTCG CGCTGTCGCT CACGCCGGCG CTCTGCGCGA CGCTGCTCAA GCCCGTCGCC GACGACCATC ACGAGAAGGA CGGCTTCTTC GGCTGGTTCA ACCGTTTCGT CGCGCGCTCG ACGCACCGCT ACACGCGGCG CGTCGGGCGG GTGCTCGAGC GCCCGCTGCG CTGGCTCGTC GTCTACGGCG CGCTGACGGC CGCCGCCGCG CTGCTGATCA CGAAGCTGCC GGCCGCGTTC CTGCCCGACG AGGATCAGGG CAACTTCATG GTGATGGTGA TTCGCCCGCA GGGCACGCCG CTCGCCGAGA CGATGCAGAG CGTGCGGCGC GTCGAGGAAT ACGTGCGCAC GCATTCGCCG AGCGCGTACA CGTTCGCGCT CGGCGGCTAC AACCTGTACG GCGAAGGGCC GAACGGCGGG ATGATCTTCG TCACGATGAA GGACTGGAAG GAGCGCAAGC GGGCGCGGGA CCAGGTGCAG GCGATCATCG CGGAGATCAA CGCGCATTTC GCCGGCACGC CGAACACGAT GGTGTTCGCG ATCAACATGC CGGCGCTGCC GGACCTCGGC CTGACGGGCG GCTTCGACTT CCGGCTGCAG GACCGCGGCG GGCTCGGCTA CGGCGCGTTC GTCGCCGCGC GCGAGAAGCT GCTCGCCGAG GGGCGCAAGG ACCCCGTCCT GACCGATTTG ATGTTCGCCG GCACGCAGGA CGCGCCGCAG CTGAAGCTCG ACATCGATCG CGCGAAGGCG TCGGCGCTCG GCGTATCGAT GGAGGAAATC AACGCGACGC TCGCTGTGAT GTTCGGCTCG GACTACATCG GCGATTTCAT GCACGGCTCG CAGGTGCGCC GCGTGATCGT GCAGGCGGAC GGGCGGCACC GGCTCGACGC CGCCGACGTG ACGAAGCTGC GCGTGCGCAA CGCGAAGGGC GAGATGGTGC CGCTCGCGGC GTTCGCGACG CTGCACTGGA CGATGGGCCC GCCGCAGTTG ACGCGCTACA ACGGCTTTCC GTCGTTTACG ATCAACGGCG CGGCGTCGGC CGGGCACAGC AGCGGCGAGG CGATGGCGGC GATCGAGCGG ATCGCGTCGA CGCTGCCCGC CGGCACCGGC TACGCGTGGT CCGGCCAGTC GTACGAGGAG CGGCTGTCGG GCGCGCAGGC GCCGATGCTG TTCGCGCTGT CGGTGCTCGT CGTGTTCCTC GCGCTCGCGG CGCTGTACGA GAGCTGGTCG ATTCCGTTCG CGGTGATGCT CGTCGTGCCG CTCGGCGTGA TCGGCGCGGT CGCGGGCGTC ACGCTGCGCG GGATGCCGAA CGACATCTAT TTCAAGGTGG GACTGATCGC GACGATCGGT TTGTCCGCGA AGAACGCGAT CCTGATCGTC GAGGTCGCGA AGGATCTGGT CGCGCAGCGC ATGTCGCTCG CCGACGCGGC GCTCGAGGCC GCGCGGCTGC GGCCGATCGT GATGACCTCG CTCGCGTTCG GCGTCGGCGT GCTGCCGCTC GCGTTCGCGA CGGGCGCCGC ATCCGGCGCG CAGATCGCGA TCGGCACGGG GGTGCTCGGC GGCGTGATCA GCGCGACGCT GTTCGCGATC TTCCTCGTCC CGCTCTTTTT CGTCTGCGTC GGGCGCGTGT TCGACGTCGT TCCGCGCCGC CGAGGCGGCG CGCAAGCGGC ACTGGAGGCC AAGTGA
|
Protein sequence | MARFFIDRPV FAWVISLFIM LGGIFAIRAL PVAQYPDIAP PVVSLYATYP GASAQVVEES VTAVIEREMN GVPGLLYTSA TSSAGQASLS LTFKQGVSAD LAAVDVQNRL KIVEARLPEP VRRDGISIEK AADNAQIIVS LTSEDGRLSG VELGEYASAN VLQALRRVEG VGKVQFWGAE YAMRIWPDPV KMAALGLTAS DIASAVRAHN ARVTIGDVGR SAVPDSAPIA ATVLADAPLT TPDAFGAIAL RARADGSTLY LRDVARIEFG GNDYNYPSFV NGKTATGMGI KLAPGSNAVA TEKRVRATME ELAKFFPPGV KYQIPYETAS FVRVSMSKVV TTLVEAGVLV FAVMFLFMQN FRATLIPTLV VPVALLGTFG AMLAAGFSIN VLTMFGMVLA IGILVDDAIV VVENVERLMV EEKLPPYEAT VKAMKQISGA IVGITVVLTS VFVPMAFFGG AVGNIYRQFA FALAVSIGFS AFLALSLTPA LCATLLKPVA DDHHEKDGFF GWFNRFVARS THRYTRRVGR VLERPLRWLV VYGALTAAAA LLITKLPAAF LPDEDQGNFM VMVIRPQGTP LAETMQSVRR VEEYVRTHSP SAYTFALGGY NLYGEGPNGG MIFVTMKDWK ERKRARDQVQ AIIAEINAHF AGTPNTMVFA INMPALPDLG LTGGFDFRLQ DRGGLGYGAF VAAREKLLAE GRKDPVLTDL MFAGTQDAPQ LKLDIDRAKA SALGVSMEEI NATLAVMFGS DYIGDFMHGS QVRRVIVQAD GRHRLDAADV TKLRVRNAKG EMVPLAAFAT LHWTMGPPQL TRYNGFPSFT INGAASAGHS SGEAMAAIER IASTLPAGTG YAWSGQSYEE RLSGAQAPML FALSVLVVFL ALAALYESWS IPFAVMLVVP LGVIGAVAGV TLRGMPNDIY FKVGLIATIG LSAKNAILIV EVAKDLVAQR MSLADAALEA ARLRPIVMTS LAFGVGVLPL AFATGAASGA QIAIGTGVLG GVISATLFAI FLVPLFFVCV GRVFDVVPRR RGGAQAALEA K
|
| |