Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMASAVP1_A1567 |
Symbol | |
ID | 4681212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei SAVP1 |
Kingdom | Bacteria |
Replicon accession | NC_008785 |
Strand | - |
Start bp | 1540836 |
End bp | 1542059 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639845834 |
Product | putative outer membrane porin |
Protein accession | YP_992893 |
Protein GI | 121600305 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.0706686 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGGCTC GCGCGGCCCG GCAGCTTCCC GGCAACCGCC GGCTCGCGCG CCTCGCCGGC GCCGCCGCCG CGGCATGCGC CGCCGGCTTC GGCGCGAGCA CGGCTCACGC GCAAAGCAGC GTCGTGCTGT ACGGCCTGAT CGATACGTCG ATCACCTACG CGAACAACCA GCGCACCCAC GGAGCCGGCT CGCCGGGAAG CCCCGGCTGG GCCGTGACGA GCGGCGCGCT CAATGCGTCA CGCTGGGGAT TGCGCGGCCG CGAAGACCTC GGCGACGGCG TGTCGGCGAT CTTCGCGCTC GAGAACGGCT TCTCGGGGGC GAGCGGCGCG CTATCGCAAA AGGGCGTCGA CATGTTCGGC CGGCAGGCAT GGATCGGACT GAAATCGAAG GAAGGGGGCG CGCTCACGCT CGGCCGCCAG TACGACCTCA TCCTGGATTT CGTCACGCCG CTCGGCGCGT CGGGGCCCGG CTGGGGCGGC AACCTCGCCG TTCACCCGTA CGACAACGAC GACTCGAACC GCAACATCCG CATCAACAAC GCGGTCAAGT ACACGAGCCC GACATACCGC GGATGGACCC TCGGCGCAAT GTACGGCTTC TCGAACACGG CGGGCCCGTT CGGCAACAAC GCGGCGTGGA GCGCGGGCCT GTCCTATGCG AACGGCCCGC TGAAACTCGG CGCCGGCTAT CTGAGAATCA ATCGGAATCC GAACGCCGCG AACGCGAACG GCGCGCTGAG CACGACGGAC GGCTCGGCGA CGATCACGGG CGGCAGCCAG CAGATCTGGG CCGTCGCGGG CCGCTATGCG TTCGGGCCGC ATTCGATCGG CGCCGCGTGG TCCCATTCGG CCACCGACCG CGTGAGCGGC GTGCTCCAGG GCGGCAGCAT CGCGAAGCTC GACGGCAAGT CGCTCGTCTT CGACAATTTC ACGCTCGACG GGCGCTACGT CGTCACGCCG AGGTTGAGCC TCGCGGCGGC GTACACGTAC ACGATGGGCC GCTTCGACGC GCGCTCGGGC GAAACCCGTC CGAAGTGGAA TCACATGGTC GCGCAAGCCG ATTACGCGTT CTCGATCCGC ACGGACGCGT ATCTCGAGGC CGTCTATCAG CGCGTGAGCG GCGGCAACGG CATTCCGGCG TTCAACGCGA CGATCTGGAC GCTGACGCCG TCCGCGAACG GCAATCAGGT CGTTGTCGCG CTGGGGCTGC GGCATCGGTT CTAG
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Protein sequence | MSARAARQLP GNRRLARLAG AAAAACAAGF GASTAHAQSS VVLYGLIDTS ITYANNQRTH GAGSPGSPGW AVTSGALNAS RWGLRGREDL GDGVSAIFAL ENGFSGASGA LSQKGVDMFG RQAWIGLKSK EGGALTLGRQ YDLILDFVTP LGASGPGWGG NLAVHPYDND DSNRNIRINN AVKYTSPTYR GWTLGAMYGF SNTAGPFGNN AAWSAGLSYA NGPLKLGAGY LRINRNPNAA NANGALSTTD GSATITGGSQ QIWAVAGRYA FGPHSIGAAW SHSATDRVSG VLQGGSIAKL DGKSLVFDNF TLDGRYVVTP RLSLAAAYTY TMGRFDARSG ETRPKWNHMV AQADYAFSIR TDAYLEAVYQ RVSGGNGIPA FNATIWTLTP SANGNQVVVA LGLRHRF
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