Gene BMASAVP1_A1197 details

Gene Information

• Locus tag: BMASAVP1_A1197
• Symbol: thiC
• ID: 4679878
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei SAVP1
• Kingdom: Bacteria
• Replicon accession: NC_008785
• Strand: -
• Start bp: 1182093
• End bp: 1184024
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 639845470
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_992532
• Protein GI: 121599133
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.0705849
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGCCA ACCCCAAGTT CCTGTCGGCC GACGCCCGCG TCGACGCCGC CGCCGTCGCC 
CCGCTGCCGA ATTCGCGCAA GGTCTACGTG ACGGGCTCGC AACCCGACAT CCGCGTGCCG 
ATGCGTGAGA TCACGCAGGC CGATACGCCG ACGAGCTTCG GCGGCGAAAA GAACCCGCCG 
ATCTACGTCT ACGACACGTC GGGCCCGTAC ACGGACCCGG ACGCGAAGAT CGACATTCGC 
GCGGGCCTGC CCGCGCTGCG CCAGCGCTGG ATCGACGCGC GCGGCGACAC CGAGACGCTC 
TCGGGCCTCA CGAGCGACTA CGGCCGCGAG CGCGCGGCCG ATCCGGCGAC GGCCGAGCTG 
CGCTTTCCCG GCCTGCACCG TCATCCGCGC CGCGCGAAGG CGGGCAAGAA CGTCACGCAG 
ATGCACTACG CGCGCCAGGG CATCATCACA CCGGAAATGG AATACATCGC GATCCGCGAG 
AACCAGCGCC GCGCCGAGTA TCTGGAAAGC CTGAAGGCAA GCGGCCCGAA CGGCGCGAAG 
CTCGCCGCGA TGATGGGCCG CCAGCACGCG GGCCAGGCAT TCGGCGCCGC CGCGTTCGGC 
GCGAACGCGC CGGCCGAGAT CACGCCGGAG TTCGTGCGCG ACGAAGTCGC GCGCGGCCGC 
GCGATCATCC CGGCGAACAT CAACCACCCG GAAACCGAGC CGATGATCAT CGGCCGCAAC 
TTCCTCGTGA AGATCAACGC GAACATCGGC AATTCGGCCG TCACGTCGTC GATCGGCGAG 
GAAGTCGACA AGATGACGTG GGCGATCCGC TGGGGCGGCG ATACGGTGAT GGATCTGTCG 
ACCGGCAAGC ACATCCATGA AACGCGCGAG TGGATCATCC GCAACAGCCC GGTGCCGATC 
GGCACGGTGC CGATCTACCA GGCGCTGGAG AAGGTCAACG GCAAGGCCGA GGACCTGACC 
TGGGAAATCT TCCGCGACAC GCTGATCGAG CAAGCCGAGC AAGGCGTCGA CTACTTCACG 
ATCCACGCGG GCGTGCGCCT GCAATACGTG CCGCTCACCG CGAACCGGAT GACGGGCATC 
GTGTCGCGCG GCGGCTCGAT CATGGCGAAG TGGTGCCTCG CGCACCACAA GGAAAGCTTC 
CTGTACGAAC ACTTCGAAGA GATCTGCGAG ATCATGAAGG CGTACGACGT GAGCTTCTCG 
CTCGGCGACG GCCTGCGCCC CGGCTCGATC TACGACGCGA ACGACGAAGC GCAGCTCGGC 
GAACTGAAGA CGCTCGGCGA GCTCACGCAG ATCGCGTGGA AGCACGACGT GCAGGTGATG 
ATCGAAGGCC CCGGCCACGT GCCGATGCAG TTGATCAAGG AGAACATGGA TCTTCAGCTC 
GACTGGTGCA AGGAAGCGCC GTTCTACACG CTCGGGCCGC TGACCACCGA CATCGCGCCG 
GGCTACGACC ACATCACGTC GGGCATCGGC GCCGCGATGA TCGGCTGGTT CGGCACCGCG 
ATGCTGTGCT ACGTGACGCC GAAGGAGCAC CTCGGGCTGC CGAACAAGGA CGACGTGAAG 
GAAGGCATCA TCACGTACAA GCTCGCCGCG CACGCGGCCG ACCTGGCGAA GGGCCACCCG 
GGCGCGCAGG TGCGCGACAA CGCGCTGTCG AAGGCGCGCT TCGAGTTCCG CTGGCAAGAC 
CAGTTCAACC TGGGGCTCGA CCCGGACAAG GCGCGAGAAT TCCACGACGA AACGCTGCCG 
AAGGATTCGG CGAAGGTCGC GCATTTCTGC TCGATGTGCG GCCCGCACTT CTGCTCGATG 
AAGATCACGC AGGACGTGCG CGAGTTCGCC GCTCAGCAGG GCGTGTCAGA AAACGACGCG 
CTGAAGAAGG GGATGGAAGT GAAGGCGGTC GAGTTCGTGA AGAGCGGCTC GGAGATCTAT 
CACCGCCAGT GA 

 

Protein sequence

MNANPKFLSA DARVDAAAVA PLPNSRKVYV TGSQPDIRVP MREITQADTP TSFGGEKNPP 
IYVYDTSGPY TDPDAKIDIR AGLPALRQRW IDARGDTETL SGLTSDYGRE RAADPATAEL 
RFPGLHRHPR RAKAGKNVTQ MHYARQGIIT PEMEYIAIRE NQRRAEYLES LKASGPNGAK 
LAAMMGRQHA GQAFGAAAFG ANAPAEITPE FVRDEVARGR AIIPANINHP ETEPMIIGRN 
FLVKINANIG NSAVTSSIGE EVDKMTWAIR WGGDTVMDLS TGKHIHETRE WIIRNSPVPI 
GTVPIYQALE KVNGKAEDLT WEIFRDTLIE QAEQGVDYFT IHAGVRLQYV PLTANRMTGI 
VSRGGSIMAK WCLAHHKESF LYEHFEEICE IMKAYDVSFS LGDGLRPGSI YDANDEAQLG 
ELKTLGELTQ IAWKHDVQVM IEGPGHVPMQ LIKENMDLQL DWCKEAPFYT LGPLTTDIAP 
GYDHITSGIG AAMIGWFGTA MLCYVTPKEH LGLPNKDDVK EGIITYKLAA HAADLAKGHP 
GAQVRDNALS KARFEFRWQD QFNLGLDPDK AREFHDETLP KDSAKVAHFC SMCGPHFCSM 
KITQDVREFA AQQGVSENDA LKKGMEVKAV EFVKSGSEIY HRQ