| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A0301 |
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| Symbol | secD |
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| ID | 4678538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia mallei SAVP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008785 |
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| Strand | - |
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| Start bp | 299098 |
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| End bp | 301125 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639844579 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_991652 |
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| Protein GI | 121601311 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGTT ATCCAATCTG GAAATATGTG GTGATGGTCG TGGCGCTCGC CATCGGCTTT
CTGTACACAT TGCCCAACTT CTTCGGCGAA GCGCCGGCGG TGCAGGTATC GAGCGGCAAG
GCCACGGTCA AGCTCGGCGC CGACACGCTC GCGCAGGTCG AAGCAGCGCT CAAGGCCAAC
CAGGTCGCGG CCGACGACGT CACGTTCGAC AATTCCAGCG CCAACGCGAC CATCCGCGTG
CGCCTGAAGG ACACCGACAC GCAATTGCGC GTGAAGGACA TGCTGCAAAA GACGCTGAAC
GCCGATCCGA ACGATCCGCA GTACGTCGTC GCGTTGAACC TGCAGAGCGC GTCGCCGCGC
TGGCTGACCG CGCTGCACGC GCTGCCGATG TATCTCGGCC TCGATCTGCG CGGCGGCGTC
CACTTCCTGC TGCAAGTCGA CATGACGGGC GCGCTCACGA AGAAGCTCGA TTCCGACGCG
TCCGACGCCC GCACGCAACT GCGCGACAAG GGCATTCGCG ACGGCGGCGT CGCCCGCGTC
GATCAGACGG TCGTCGCGAA CTTCGCCGAC CAGGACACCG CCGAGCAAGC GCGCAAGCTG
CTCGCCTCGT CCGTCTCCGA ACTCCAGTGG GCGACGCAGC CGGGCGGCGG CGGCTATCAG
GTCGTCGGCA CGTTCACGCC GGCCGTCCAG AAGGCCGTCG AGGAAGCGGC GCTCAAGCAG
AACCTGACGA CGCTGCACAA CCGCGTCAAC GAACTCGGCG TGTCCGAGCC GATCCTCCAG
CAGCAGGGCA ACGACCGGAT CGTCGTCGAG CTGCCGGGCG TGCAGGACAC CGCGAAGGCG
AAGGACATCA TCGGCCGCAC CGCGACGCTC GAGGCGCGCC TCGCCGATCC GCTGAACACG
CACCCGAATC CGAACGATCC GGTGCCGCCG GGCGAGGAAC TGTTCACGCA GGGCAACCAG
GCGCCGGTGC TGCTCAAGAA GCAGGTGATC TTCACGGGCG ACCGCATCAT CGACGCGTCC
GCGGGCTTCG ACGAGCATCA GCGTCCGTCC GTGAACATCC GCCTCGATTC GGCGGGCGGC
CGCGCGGTGC GCGCGGTGTC GCGCGAGAAC ATCGGCAAGC CGATGGCGAT GGTGCTGTTC
GAGAAGGGCA AGGGCGAAGT GCTGACCGTC GCGACGATCC AGTCGGAGCT CGGCGACCGC
TTCCAGATCA CGGGCCAGCC GACCCCGCAG GCGGCCGCCG ATCTCGCGCT GCTGCTGCGC
GCGGGCTCGC TCGCCGCGCC GATGGACATC ATCGAGGAAC GCACGATCGG CCCGAGCCTC
GGCGCGGACA ACATCCGGAT GGGCTTCCAT TCGGTGATCT GGGGCTTCGT CGCGATCGCC
GTGTTCATGA TCGCGTACTA CATGCTGTTC GGCGTCGTAT CGGTGCTCGG CCTGTCGGTG
AACCTGCTGC TGCTCGTCGC GGTGCTGTCG CTGATGCAGG CGACGCTCAC GCTGCCCGGC
ATCGCGGCCA TCGCGCTCGC GCTCGGCATG GCGATCGACT CGAACGTGCT GATCAACGAG
CGCATCCGCG AGGAGCTGCG CCGCGGCGCA TCGCCGCAGA TCGCGATCCA GGAAGGCTAC
GCGCACGCGT GGGCGACGAT TCTCGATTCG AACGTGACGA CGCTGATCGC GGGCCTCGCG
CTGCTCGCCT TCGGCTCGGG CCCGGTGCGC GCGTTCGCGA TCGTGCACTG CCTCGGCATC
CTGACGTCGA TGTTCTCCGC GGTGTTCTTC TCGCGCGGCC TCGTGAACCT CTGGTACGGC
GGGCGCAAGA AGCTGCAGTC GCTCGCGATC GGCCAGGTGT GGCGCCCCGC CGCCGCCGAA
GCCGGCGCCG CGCCGCAGCT CGGCCAGGAC GCGCGCGCGA ACGCGCCGCA GCCCGGCGCG
CGCGTCGCCG CGCCGAAGCA GCCGGCGGGC GCGCCGCGCA CCGGCAAGCC GGTCGCGCGC
CGCCGCTCGG GCCCGGGCGT GCCGCCCAAG CAGGGCTCGT CCAACTAA
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| Protein sequence | MNRYPIWKYV VMVVALAIGF LYTLPNFFGE APAVQVSSGK ATVKLGADTL AQVEAALKAN
QVAADDVTFD NSSANATIRV RLKDTDTQLR VKDMLQKTLN ADPNDPQYVV ALNLQSASPR
WLTALHALPM YLGLDLRGGV HFLLQVDMTG ALTKKLDSDA SDARTQLRDK GIRDGGVARV
DQTVVANFAD QDTAEQARKL LASSVSELQW ATQPGGGGYQ VVGTFTPAVQ KAVEEAALKQ
NLTTLHNRVN ELGVSEPILQ QQGNDRIVVE LPGVQDTAKA KDIIGRTATL EARLADPLNT
HPNPNDPVPP GEELFTQGNQ APVLLKKQVI FTGDRIIDAS AGFDEHQRPS VNIRLDSAGG
RAVRAVSREN IGKPMAMVLF EKGKGEVLTV ATIQSELGDR FQITGQPTPQ AAADLALLLR
AGSLAAPMDI IEERTIGPSL GADNIRMGFH SVIWGFVAIA VFMIAYYMLF GVVSVLGLSV
NLLLLVAVLS LMQATLTLPG IAAIALALGM AIDSNVLINE RIREELRRGA SPQIAIQEGY
AHAWATILDS NVTTLIAGLA LLAFGSGPVR AFAIVHCLGI LTSMFSAVFF SRGLVNLWYG
GRKKLQSLAI GQVWRPAAAE AGAAPQLGQD ARANAPQPGA RVAAPKQPAG APRTGKPVAR
RRSGPGVPPK QGSSN
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