Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMASAVP1_A0233 |
Symbol | cpdB |
ID | 4681653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei SAVP1 |
Kingdom | Bacteria |
Replicon accession | NC_008785 |
Strand | + |
Start bp | 235906 |
End bp | 237954 |
Gene Length | 2049 bp |
Protein Length | 682 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639844511 |
Product | 2`,3`-cyclic-nucleotide 2`-phosphodiesterase |
Protein accession | YP_991584 |
Protein GI | 121599745 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.766101 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCGTTTTC GCCGGCGGCG CCTTGCCGCC GCCCTCGTCG CGTGCGCGGC GCTCGTCGCG GGCTGCAACG ACGACGTCGA TTCGCCCGGC GCGCAGTCCG GCGCGAGCGC GCCCGCCGGC ACGAAGGCGA CGCTCGCCGT GCTCGAGACG ACCGATCTGC ACACGAACGT GCTGTCGTAC GACTACTTCA AGCTCGCGGC CGACAAGTCG CTCGGCTTCG AGCGGGTCGC GACGCTGATC GCGCAGGCGC GCGCGCAATA TCCGAACACG CTGCTGCTCG ATAACGGCGA CACGATCCAG GGCACGGCGC TCGCCGACTA TCAGGCGCTC GTGAAGCCCG TGTCGTGCGG CGAGACGCTT GCGATCTACA AGGTGATGAA CGCGGCGAAG TTCGACGGCG GCGGCATCGG CAATCACGAA TTCAACTACG GGCTGCCGTA CCTGTCGCAG GTGACGGGCA ACGCGTTCGC CGTCGACGGC CTGCCCGATC CGGCCCGGCA GAAGAAATGC GCGGGGCCGG ACTTCCCGCA GGTGCTCGCG AACGTGATCA GCGCGAAGAC GAACGCGCCC CTCTTCACGC CGTACACGAT CCTCACGAAG AACGTCACCG CGACGACGCC CGACGGCCGC ACGGTCACGG CGCCCGTGAA GGTCGGCATC ATCGGCTTCA CGCCGCCCGC GATCATGAAC TGGGACAAGC GCTGGCTCGA CGGCAAGGTC TATACGACGG GCCTGAAGGA AGCCGCCGAG AAGTACATTC CCGAGATGCG CGCGAAGGGC GCGGACCTCG TCGTCGCGAT CTCGCACGGC GGGCTCGACA ACTCGCCGTA CTCGCCGACG ATGGAAAACG GCAGCTGGTG GCTGTCCACC GTGCCCGGCA TCGACACGAT GCTGATCGGC CACTCGCACC AGGTGTTCCC CGACGCGACG AGCACCGTCG CGCAGTTCAA CCTGCCGGGC GTCGACAAGG TCAAGGGCAC GGTCAACGGC GTGCCGACCG TGATGGCGAA CTACTGGGGC AAGCACCTCG GCGTGATCAA GCTCGGCCTC GCGTTCGACG GCAAGACGTG GCGCGTCGAC AAATCGCAGA CCACCGTCGA GGCGCGCTCG ATCCAGAACC CGGACAAGAG CTACGTCGAC GCCGATCCGT CGGTGGCCGC GGCGATCGCG GCCGAGCACC AGGCGACGAT CGACTACGTG AAGACGCCGA TCGGCAGCAC CGACTACCGG ATGACCAGCT ACTTCGCGGA CGTGGGCGAT CCGGGCGCGA TCCAGCTCGT CAACGAGGCG CAGGCCGACT ACGTCGCGAA CTACGTGCAG ACGAACCTGC CGCAGTATGC GTCGCTGCCG GTGCTGTCGG TGAGCGCGCC GTTCAAGAGC GGCTTCGGCG GCGGCACCGA TTTCACCGAC GTCGCGGCGG GCGCGCTCGC GATCAACAAC GCGGCCGATC TCTACCTGTA TCCGAACACG GTCTACGCGG TGAAGGTGAG CGGCGCGGAC ATCAAGAACT GGCTCGAGAC CGCGGCGAAG CGCTTCAACA CGATCGACCC GACGAAAGCG ACCGTGCAGA AGCTCGTGAG CACGTTCCCC GGCTACAACT TCGACATGTT CACGTCCGCC GATCTGCGCT ACGAGATCGA CGTCACGCAG CCGGTGGGCA GCCGGATCCG CAACCTCGCG TACAAGGGCG CGCCGATCGA TCCGAATGCG CAGTTCATCG TCGCGACGAA CAACTACCGC GCGAGCGGCG GCGGCAACTT CCCCGGCCTG GACGGCAGCA AGACGATCTT CGCGTCGCCC GACGCGAACC GCGACGTGCT GATCGCATAC ATCAAGAAGC GCGGCCGGAT CACGCGCGCG GCGGACGGCA TGCAGCGCAG TTGGCGCTTC ACGAAGCTCG CGGGCTCGGT CGCGCACGTG CAGTTCGCGT CGGCGCCGAA CCTCGCGGCG CTCGCGAGCA CCGCGGGCCT CGCGGGCATC ACGCAAGTCG CGGCCGACGA CGGCTCCGGC AAGGGACTCG CGACTTACGA GATCGATCTG ACGCAATGA
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Protein sequence | MRFRRRRLAA ALVACAALVA GCNDDVDSPG AQSGASAPAG TKATLAVLET TDLHTNVLSY DYFKLAADKS LGFERVATLI AQARAQYPNT LLLDNGDTIQ GTALADYQAL VKPVSCGETL AIYKVMNAAK FDGGGIGNHE FNYGLPYLSQ VTGNAFAVDG LPDPARQKKC AGPDFPQVLA NVISAKTNAP LFTPYTILTK NVTATTPDGR TVTAPVKVGI IGFTPPAIMN WDKRWLDGKV YTTGLKEAAE KYIPEMRAKG ADLVVAISHG GLDNSPYSPT MENGSWWLST VPGIDTMLIG HSHQVFPDAT STVAQFNLPG VDKVKGTVNG VPTVMANYWG KHLGVIKLGL AFDGKTWRVD KSQTTVEARS IQNPDKSYVD ADPSVAAAIA AEHQATIDYV KTPIGSTDYR MTSYFADVGD PGAIQLVNEA QADYVANYVQ TNLPQYASLP VLSVSAPFKS GFGGGTDFTD VAAGALAINN AADLYLYPNT VYAVKVSGAD IKNWLETAAK RFNTIDPTKA TVQKLVSTFP GYNFDMFTSA DLRYEIDVTQ PVGSRIRNLA YKGAPIDPNA QFIVATNNYR ASGGGNFPGL DGSKTIFASP DANRDVLIAY IKKRGRITRA ADGMQRSWRF TKLAGSVAHV QFASAPNLAA LASTAGLAGI TQVAADDGSG KGLATYEIDL TQ
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