| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_0843 |
|---|
| Symbol | |
|---|
| ID | 4677667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei SAVP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008784 |
|---|
| Strand | - |
|---|
| Start bp | 850061 |
|---|
| End bp | 851611 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639843363 |
|---|
| Product | squalene/phytoene synthase family protein |
|---|
| Protein accession | YP_990443 |
|---|
| Protein GI | 121596813 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.336434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTGCGCCG TGCGGTGCGC GCGCCGTTTA CTTCGCGGTT TCGTCGAGGC CGCGTTGCAA
CAGTTCGGTC AACAATCCGG TCATCCCGTC CGGATGCGCG GCCGCCCGCT CGTTCAGGCG
CGCGACGAGC TCGATGTTCA GCTTGCACGC GAACGGCACG AGGCCCTGCG CCTGTTCGAG
CCTGCGCCGC TCGCGGCGAT CGGCCGCCGC ATCTTCGGCG CCCTTGCCGA AGCGCGCGGA
TGTCGTCTGC TTCATCGCGT GCGTCAGCTT CAACGCCTTG TTCTTCTCGA GATCGGTTTT
CTTCATCGCC ATCGCGGTCA CCTCTTGCAG GAAAGGATGC GATTGTACGC ATTGCCGCGC
GGCGCGGATA TCGGCCGCCG CGCGCCGTGC GGCGCGCCCG GTCGCACCCT GCGCGGCCGG
CCGTGCGCGA AGCGCCGGCG GCCCGCGCGC ATTTGCCGAT ACAATGCGGC AGCCATTCGT
ATGACCGACC TGATCCGATC CATGGGCAAT TCCACCCGGG CCTTTCTGCT GGGCCCCCTG
CTGAAGGGCG TGTCGCGCTC CTTCTATCTG ACGTTGCGCG TGCTGCCGCA AGGCATGCGC
GACCCGATCG GCCTTGCGTA TCTGCTCGCG CGCGCGGCCG ACACGATCGC CGACACGTCG
CTGATCCCGC CCGCTCAGCG GCTCGAACTG CTGCTGTCGC TGCGCGCGCA GATCAACGGC
GCGCCCGATC CGCACGCGCT CGCGCGGATC GCGGGCGAGG TCGCGGGGCA GCAGGCGCAG
ACGGACGAGA AGACGCTGCT CGAATCGCTT GGCCCCGCGC TCGCGGTGCT GTCGCAATTG
AGCGCGCCCG ATCGCGCCGC GGTGCGCGGC GTCGTCACCA CGCTCACCGA AGGGATGGAA
TTCGATTTGC GCACGTTCCC GGACGAATCG TCGGGCCGCA TCGTCGCGCT GCGGGAATGG
CCGGCGCTCG ATCGCTATAC GTATCTCGTT GCCGGCTGCG TCGGCGAATT CTGGACGAAG
ATGACGTGCG CGCATCTGCC CGGGCTGCTG ACCGAGCGGG AGGACACGAT GAGCGAGCGC
GGCATCCGCT TCGGCAAGGC GCTGCAGATG ACCAACGTGC TGCGCGACTG CGGCAGGGAC
CTGCGGATCG GCCGCTGCTA TCTGCCGCAG GCGATGCTGG ACGAATACGG GCTGCGCGCG
GAGGATCTGC TGGGGCCGGA CGCTTCGCTG CGCGTACGGC CGCTGATGCA TGCGCTCGTG
CGCACGACGC TCGCGCATTT TCGCGCGGGC ATCGATTATA CGTTCGCGAT TCCGCGCCGC
GCGCCGCGCC TGCGGCTTGC CTGTTTCTGG CCGATCGCGA TCGGCCTGCG GACGCTCGCG
CTGCTCGCGT CGAACGACGC GTGGCTCGAT CCGGCGCGCG CGTCGAAGGT GCGGCGCGGC
GACGTCTACC GGATCCTCGC GTATTCGCTG CCGCTCGCGA TGTCGAACGG CGCGCTGCGC
GCGTGGCTCG ACCGCCTGAT CGCGGACGTC GAGGCGCGGC TCATCGCGTG A
|
|---|
| Protein sequence | MCAVRCARRL LRGFVEAALQ QFGQQSGHPV RMRGRPLVQA RDELDVQLAR ERHEALRLFE
PAPLAAIGRR IFGALAEARG CRLLHRVRQL QRLVLLEIGF LHRHRGHLLQ ERMRLYALPR
GADIGRRAPC GAPGRTLRGR PCAKRRRPAR ICRYNAAAIR MTDLIRSMGN STRAFLLGPL
LKGVSRSFYL TLRVLPQGMR DPIGLAYLLA RAADTIADTS LIPPAQRLEL LLSLRAQING
APDPHALARI AGEVAGQQAQ TDEKTLLESL GPALAVLSQL SAPDRAAVRG VVTTLTEGME
FDLRTFPDES SGRIVALREW PALDRYTYLV AGCVGEFWTK MTCAHLPGLL TEREDTMSER
GIRFGKALQM TNVLRDCGRD LRIGRCYLPQ AMLDEYGLRA EDLLGPDASL RVRPLMHALV
RTTLAHFRAG IDYTFAIPRR APRLRLACFW PIAIGLRTLA LLASNDAWLD PARASKVRRG
DVYRILAYSL PLAMSNGALR AWLDRLIADV EARLIA
|
|---|
| |