| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_0238 |
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| Symbol | |
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| ID | 4678172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia mallei SAVP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008784 |
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| Strand | - |
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| Start bp | 265936 |
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| End bp | 270561 |
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| Gene Length | 4626 bp |
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| Protein Length | 1541 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639842766 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_989849 |
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| Protein GI | 121597919 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.691901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGAAG TGCAGAGCAG CGCGCCGTCG GACAGCCAGC AGAAGCTCGC GGCGCTCGCG
CAACGAGGCA GCAATGCGGA CGCCGTGCAG ACGGTGTCCA ACATGGGGCT CGCGATCAAC
GCGGCGCAGG TCACGGCGGC CGGCACGAGC GCATGGGCGG CCGGCACGTT CCAGTGCTTC
GCCGGGCGCG TGATCGCGCC GCTCGGCGGC GCGATGCTCG GCGGCGCGCT CGCCGAGGCG
CTCGGCGCGG ATCGCCCGGT CACATGGGTG CTGGACAAGA TGGGGCTGCC GGCCGTCGCG
AAGCCCGGCA AGGCGCCCGC TCGCGTCGGG CACAAGATCG TCCATGAGAA CGCCTTCATC
GGCGCGCTGA CCGGCCTGCT GGCGGGGATC GCGGTCGGCG TGGCGATCGC CGCCGCGGCC
GCCGCGATCG TGGCGACGGG CGGCGCGGCC GCGGTCGCCA TCGCGGCGGC CGGCCCGTTC
GTGGTCGGGT TCGTCTCGGG CGCGGTGGGC GGTTTCGTCG GCGCGGCAGT GGCCAAGGGC
ATCGGCCATA CCGGCTCGGT GACGGGCGCG ATCGCGCACG GCTCGCCCAA CGTCTCGTTC
GAAGGCGCGC CGGTTGCCCG CGTGACCGAT CCGGTGACCT GCAGCAAGGA TCCCGGCATG
CCGCCGCCGC AGATCGCACA GGGCAGCCTG ACCGTATCGG TCAACGGCCT GCCGCTCGCG
CGGATCGGCC ACAAGATCAC ATGTTCGGCG GTCATTCAGG AAGGCTGCAC GACGATCAGC
GCGGACGAGA CGACCGGCAC GTTCGGCAAG ATCGACGCGA ACGTGTCGCT TCTCGAGCAA
CTGGTGCTGA CGGCCACCGA CGTCATCATG ATGCGTTCGG CCACCAAGGA AGGCGGCTTG
CTGGACGGCG TGCTGCGCGA GCTGCTCGGC GAGCCGATCG ACATGGCGAC GGGCGATTAC
GCCGACTACC GGACGGACTT CACGTGGCCG CACGTGCTGC CGCTCACGCT TTCCCGGGCG
TACGCGGGGC GGCAGCCGGT CGAGGGGCTG CTCGGCGACA GGTGGATCAG CAACTGGTCG
CAGCGGCTGC GCTATCGGCG GCCCGCGGAC GGCCCGGCCA CCGTCACGTT TTTCGACGCG
GACGGCCAGC AGCTCGTGTA CCCGGTTCCG CACGAGCCGT TCAACGCGAT CAACTTCTGG
GCGCCGCACT ACGCGTTGCA CGGCAGCCGC GCGCGGGCCG TCGTTTTCGA CGAGCGCTCG
CAGCAATCGC TGATTTTCGA GCCCGCGCAT GCCGAGGACG ACGTCGCGCG CCTCACCCGC
ATCGAGGATC GCAACGGCAA CACGATCGAC TTCGAGTACA ACGCGCTCGG CCGGCTATGC
ACCGTGCGGC ACAGCGGCGG GATGACGCTG TGGGTCACCT GCGATTCCCG CGGGTTGTTG
CAGAGCGTGT CGGAGCAGCC GGGCGGGGAG GGCGAACTGG TTCGCTATCG TTTCGACGGC
AAGCGCCTGA CCGACGTTCA CAGCCGCTTC CAGGGCGAAT TTCATTTCGG CTATACCGAC
GAGGGCTGGC TGAATCACTG GCGCGACAGC GGCGCGACCC AGGTGGCGCT GCGCTATGAC
GAGCGCGGAC GGGTGATCGC CACGCGCACG AATACCGCGC TGTACGACGA TCGCTTCGAG
TATGACGACG AGGCGCGGCT GACGACGTAC ATCGACGCGC TTGGGCATCG GCATCAACGC
TGGTTCGATG CGCAGAACCG GTTGATTCGG TCGCGGGATC CGCTGGGGCG GGTAATGTGC
GCGAGCTACG ACGAAAACGG ATGGCTCGCC TCCCGCACGG ATCCGCTCGG CCGTGTCAGC
ACGTATCGCC ACGATTGCCG CGGCCGCCCG CTTCAGGTCA CCGACGCTTT CGGGCGGGTG
AGCCGCTATG GGTGGAACGG CGCCGGCCAA CTCGTCGAAC AGCAGGATCA CAACGGCAAG
GTGCAGTGGC ACTACAGCGC CGAGGGCAAT CTGGTCGCGT TGCGGGCGCG ATCCGGCGAG
ACGCGCTTTC GCTATGACGC GCGCGGGCTG CTCGTCGGCC GAACCGATCC GGACGGTGCC
GTGCATGCGT GGCGGTATGA CGGCGCCGGG CGCCCCGAGC GCTGGACCGA TCCGCTGGGG
CGGCATACCT ATCTCGAGCA TGACCGTTAC GGCAGATTGA TCGCGCGCAT CGATGCCGCG
GGCCATCGCA CGACGTACGG CTATGAGCGA GGGCCGTCCA ACCCGCGCGA GCAGCTCGCG
AGCATCACCT ATCCGGACGG CGCGATTGCG CGCTTCCAGT ACGATTCGGA AGGCTTGCTG
ACGGAAGCGG TCAATCCGTT GGGCCAGCGC ACTCGCTATG CGTGGGGCGC GTTCGATCTG
CTAGCGAGCG TGACGGACCC CGGACAGGCG ACGACGCGCT ATCACCGCGA CGGCGCGGCT
CGCCTGATCG GCGTGACCAA TGCGGCGGGG CAGCACTGGA AGTTCGAGCG GGACCCGGCG
GGCCAACTGA TCGCGCAAAC CGACTGGAGT GGCCGCCGCA CGCGGTATGT CCTCAATCCG
ATGGGACAGG TAACGGAAAA GCATCTGCCC GACGGCGTGG CGATACGTTA CGAATACGAC
AGCCAGGACC GGCTCGTTGC ATTGACCGGA CCGCGTCGGC GTCACGTGTT TGCCTGGACG
GCGAGCGGGT TGCTGACTCG GGCGGAGGTC TGGACGCGAA ACGACGAAGC GGGCGAATGG
CGGCGCGACG ACCGGCTGGA CCTGGAGTAC GACGACGCCT GTCGGCTTGT CGAGGAAAGT
CAGCATGGCC GGGCCGTAGG CTACGAATAC GATCCGATGG GGCGCACGCG GTCGATGGCT
ACGCCGAGCG GGCGCACGCT TTGGCAGTAC GACGCGGCAG GCCAGCTCGG CTCGATGGAA
AGTAACGGCC ACCGGTTCCA TTTCGATTAC GACGGGCTCG GCCTGGAAAC GCTTCGGCGC
TACACGCCGA CGCAGGCGCA CGTGGCGCGG CACCCGCAGT GGGTCGAGCC GTATTCCGAA
GGCTATGCGC AACAGCAAGA TCACGACGGA CGGTGGCGAT TGACGAAGCA AGCCTGCGCA
ACCTGGGCGG AGCTTCGCGA GCGCGGCGCG GCGCGTACGC GCCATTACGA GTGGGACGCC
GCGGGGCGCT GCGTCGGGAT GCACGAGGCG CGCCGAGGGC TGCCGATCGC GCAGGACCGC
TGGCGCTACG ATGCCCGCGG CCAAGTCGTG GATGCGCATT ACGAGCGCAC TGAAACGCGC
AGCGGGCGCG AGCGCTACGA GTACGATGCG CTCGGGAACG TCTCGACACG GCAGATCGAC
GCGGGCGAGG CGATGACGCA CGTCTATCAC GGCGACCAAT TGGTCAGCGC CGGGCCGAGT
CGTTACGAAT ACGACGCGCG CGGGAGGATG ATCGCGCGAA CGGAAAGGCG CGACGGCTTC
CGGCCGCGGA CGTGGCGTTA TCAGTGGGAC GACTTCGATC AGCTCGAGCA AGTCCTGACC
CCGGAGGGCG AGCGCTGGCG GTATCGGTAC GATGCGTTCG GGCGGCGCAT CAGCAAGGCG
TGCCTGTCGA CGCCGAAAGC CGGCCGGCCG GCGCGGATCG ACTATTTGTG GTGCGGCAGC
CGGCTGATAG AGGCATGGCG CGCGTACGGC GAACGAGACG GCACGCAATA CGAAATCCAG
CGCTGGCACT ATCGACCGGG CACCCATTCG GTTTTGGCGC AGGAGCGACT GAAATACGAC
GACAAGCCGG ATCTGCAGAA CAGCGAGTGG TTTGCGCTCG CTTGCGATCC CAATGGCGCT
CCGCATACGC TGTACAGTTC GGACGGCAGG ATCATGTGGA GTGCGCGGCG CGAACTCTGG
GGCCGCGTGG CGGACGATCC GGACCGCGAT ACCGTCCGGC ATGCGGTGCG CGAGCAGTTG
CGAACCAGCC TGCTGACAGG CGATGCATTC GATCCTCCGG ACTGCGAACT GCGATTTCCG
GGGCAATGGG CGGACGAGGA AAGCGGCTTA CATTACAACT TCCACCGGTA TTACGATCCT
GCGACCGGGC AGTATCTGAG TCCCGATCCG TTGGGTCTCG CCGGCGGGCT GAGAACGCAT
GCGTATGTTC ACGATCCGCT GCAGTGGGTG GACCCGCTGG GGCTGCAGGG ATACCAAGGT
TCCGGGAAGC CGGAATTCAT CGGTAACCGG AAGCTGCCTC AGAACGACTT GCCCTGGATC
AAGTATCAAA AGCGCGTCAC GGGGCGCCCG TACGAGGAAA CGTGGCGCGT AGGCGATCAC
AACGTCAATC TCGACGGGAA GCGAGCCGGC TATACGGTCG AGGCGAAATG GACCGGCAAG
AACAGTGCCG CGTGGGAGTC TTCCCCCTAT AATCCCGAGC ACGAGTTCTA CAACGAGTCC
AAGATTCTCG ATCAGGCGGG CCGGTTGCTC GAGTTCAATG ACGCTTCCGG CGGAAGCGGG
GTGCGTTATG CGGTGTCGAA TGCGGAAGCC CAGCAGCATT TCACGCAGCT ATTCGAGCAG
CATTTCCCTA CCGAAATGCA GGGCGGTACG TTGAGTGTCT GGCACGTCCC AGGAAACGGA
ATGTGA
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| Protein sequence | MGEVQSSAPS DSQQKLAALA QRGSNADAVQ TVSNMGLAIN AAQVTAAGTS AWAAGTFQCF
AGRVIAPLGG AMLGGALAEA LGADRPVTWV LDKMGLPAVA KPGKAPARVG HKIVHENAFI
GALTGLLAGI AVGVAIAAAA AAIVATGGAA AVAIAAAGPF VVGFVSGAVG GFVGAAVAKG
IGHTGSVTGA IAHGSPNVSF EGAPVARVTD PVTCSKDPGM PPPQIAQGSL TVSVNGLPLA
RIGHKITCSA VIQEGCTTIS ADETTGTFGK IDANVSLLEQ LVLTATDVIM MRSATKEGGL
LDGVLRELLG EPIDMATGDY ADYRTDFTWP HVLPLTLSRA YAGRQPVEGL LGDRWISNWS
QRLRYRRPAD GPATVTFFDA DGQQLVYPVP HEPFNAINFW APHYALHGSR ARAVVFDERS
QQSLIFEPAH AEDDVARLTR IEDRNGNTID FEYNALGRLC TVRHSGGMTL WVTCDSRGLL
QSVSEQPGGE GELVRYRFDG KRLTDVHSRF QGEFHFGYTD EGWLNHWRDS GATQVALRYD
ERGRVIATRT NTALYDDRFE YDDEARLTTY IDALGHRHQR WFDAQNRLIR SRDPLGRVMC
ASYDENGWLA SRTDPLGRVS TYRHDCRGRP LQVTDAFGRV SRYGWNGAGQ LVEQQDHNGK
VQWHYSAEGN LVALRARSGE TRFRYDARGL LVGRTDPDGA VHAWRYDGAG RPERWTDPLG
RHTYLEHDRY GRLIARIDAA GHRTTYGYER GPSNPREQLA SITYPDGAIA RFQYDSEGLL
TEAVNPLGQR TRYAWGAFDL LASVTDPGQA TTRYHRDGAA RLIGVTNAAG QHWKFERDPA
GQLIAQTDWS GRRTRYVLNP MGQVTEKHLP DGVAIRYEYD SQDRLVALTG PRRRHVFAWT
ASGLLTRAEV WTRNDEAGEW RRDDRLDLEY DDACRLVEES QHGRAVGYEY DPMGRTRSMA
TPSGRTLWQY DAAGQLGSME SNGHRFHFDY DGLGLETLRR YTPTQAHVAR HPQWVEPYSE
GYAQQQDHDG RWRLTKQACA TWAELRERGA ARTRHYEWDA AGRCVGMHEA RRGLPIAQDR
WRYDARGQVV DAHYERTETR SGRERYEYDA LGNVSTRQID AGEAMTHVYH GDQLVSAGPS
RYEYDARGRM IARTERRDGF RPRTWRYQWD DFDQLEQVLT PEGERWRYRY DAFGRRISKA
CLSTPKAGRP ARIDYLWCGS RLIEAWRAYG ERDGTQYEIQ RWHYRPGTHS VLAQERLKYD
DKPDLQNSEW FALACDPNGA PHTLYSSDGR IMWSARRELW GRVADDPDRD TVRHAVREQL
RTSLLTGDAF DPPDCELRFP GQWADEESGL HYNFHRYYDP ATGQYLSPDP LGLAGGLRTH
AYVHDPLQWV DPLGLQGYQG SGKPEFIGNR KLPQNDLPWI KYQKRVTGRP YEETWRVGDH
NVNLDGKRAG YTVEAKWTGK NSAAWESSPY NPEHEFYNES KILDQAGRLL EFNDASGGSG
VRYAVSNAEA QQHFTQLFEQ HFPTEMQGGT LSVWHVPGNG M
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