| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BARBAKC583_0966 |
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| Symbol | rpoD |
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| ID | 4684277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bartonella bacilliformis KC583 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008783 |
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| Strand | - |
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| Start bp | 997353 |
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| End bp | 999353 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 639842145 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_989245 |
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| Protein GI | 121601699 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 0.0575289 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAGG TTAAAAAGAA AGACAATCTA GAAGTAATGG GTCAAGGAAG CTTAGACAAT
GCTCCTCTTG ATTTTTCCGA TGACGCCATC AAAAAAATGA TAAAGCTTGC CAAAAAAAAT
GGCTACGTAA CAATGGATGA ATTAAATGCG GTTCTTCCCT CTGATGAAGT TACATCCGAA
CAAATTGAAG ATATATTGAT GATGTTTTCT GAGATGGGTG TTAACGTTGT AGACGATGAA
GATGAAATAG AAGCTGAGCA TTATGAAGGG GAAATTACGG TAGAAGGTGG TGATTTGGTA
GAGGCCACTA GCCGTGAAGT TGCGACGATA CCTAAACGTG AAGCAACAGA TAGAACAGAC
GATCCGGTGC GTATGTATTT GCGTGAAATG GGAGCAGTTG AGCTTCTTTC TCGTGAAGGG
GAAATTGCCA TTGCTAAGCG CATTGAGGCA GGACGTGAAA CAATGATTTC GGGGCTTTGT
GAAAGTCCTT TAACATTTCA GGCGCTTATT ATTTGGCGTG AAGAATTGAG AGAACAGCGT
ATCCTTCTTC GTGAAATTAT TGATCTTGAA ATGACTTACG CTGGACCAGA AGCCAAGCAA
GCCCCAATTA TTGAGCGGAG TGAAGTAGAA AAAATTAAAA AAGAAGCATC CCCGTCTGAT
AAAGATGACG TGGACATTAT TGCAGAGGAT ATAGGTGCTG AAGATGATGA AGATGATGAG
GTTAATTTGT CATTTGCAGC AATGGAAAAT GAATTATATC CTCAGATTAT GGAAACTTTG
AACTTTATTG CTGAAACTTA TGTCAAATTG AGGAAATTGC AAAATCAGCA TGTTGAAAGT
AGTTTAGCTG CTTGTAAAGC AAGTGATCTC TCTTCTGCTC AAAAGAAGAA ATCTACTCAA
TTGAAATCTG ATTTGATTCA AGCAGTAAAA TCTCTTTCCC TGAACCAAAA TCGTATTGAA
GCCTTAGTTG AACAACTGTA TGATATTAAT AAAAGGTTGG TTCATAATGA GGGTAAATTA
AAGCGGATTG CGAATAGTTA TGGAATTGGG CACGAAGATT TTCTAAAAGA ATATCAAGGC
CGTGAATTGG ATTCAGATTG GGTTAATTAT ATTGCAACTT TACCAGGATC TGGTTGGAAA
GAATTTTCAA CTCGTGAAGT TGAGGTCATT CGTAATTTGC GTAGTGAGAT ACAAAATCTT
GCGCAAGAAA CTGCTATTTC GATAGGAGAG TTTCGTCGGA TTGTTACCCA AGTACAAAAG
GGTGAGCGCG AAGCGACGAT TGCTAAAAAA GAAATGGTAG AAGCGAATTT GCGTCTTGTT
ATTTCAATTG CAAAAAAATA CACAAACCGT GGTTTGCAGT TTCTTGATCT TATTCAGGAA
GGTAATATCG GTTTGATGAA GGCCGTTGAC AAATTTGAAT ATCGGCGTGG ATATAAGTTT
TCAACTTATG CAACATGGTG GATTCGTCAA GCAATTACGC GTTCAATTGC TGACCAGGCA
CGTACCATTC GTATTCCTGT TCATATGATT GAAACTATTA ACAAAATTGT TCGTACATCG
CGCCAAATTT TACATGAAAT TGGGCGCGAA CCTACACCAG AAGAATTATC CAGTAAACTT
TCTATGCCTT TAGAAAAAGT GCAAAAAGTT CTTAAAATTG CGAAAGAGCC TATTTCACTT
GAAACGCCTG TTGGTGATGA AGATGATTCT CATTTAGGGG ATTTCATTGA GGATAGAAAT
GCTTTATTGC CAATTGATGC AGCTATTCAG GCTAATTTGC GTGATACAAC AACTCGCGTA
CTCGCTTCAT TAACGCCACG TGAAGAGCGT GTTTTAAGAA TGCGTTTTGG TATTGGGATG
AATACTGATC ATACGTTAGA AGAAGTTGGT CAGCAATTTT CAGTCACACG TGAGCGTATC
CGTCAGATTG AAGCAAAAGC ACTTCGTAAA TTGAAGCATC CTAGTCGTTC ACGTAAATTG
CGTAGTTTTC TTGATTCATA A
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| Protein sequence | MAKVKKKDNL EVMGQGSLDN APLDFSDDAI KKMIKLAKKN GYVTMDELNA VLPSDEVTSE
QIEDILMMFS EMGVNVVDDE DEIEAEHYEG EITVEGGDLV EATSREVATI PKREATDRTD
DPVRMYLREM GAVELLSREG EIAIAKRIEA GRETMISGLC ESPLTFQALI IWREELREQR
ILLREIIDLE MTYAGPEAKQ APIIERSEVE KIKKEASPSD KDDVDIIAED IGAEDDEDDE
VNLSFAAMEN ELYPQIMETL NFIAETYVKL RKLQNQHVES SLAACKASDL SSAQKKKSTQ
LKSDLIQAVK SLSLNQNRIE ALVEQLYDIN KRLVHNEGKL KRIANSYGIG HEDFLKEYQG
RELDSDWVNY IATLPGSGWK EFSTREVEVI RNLRSEIQNL AQETAISIGE FRRIVTQVQK
GEREATIAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF
STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKIVRTS RQILHEIGRE PTPEELSSKL
SMPLEKVQKV LKIAKEPISL ETPVGDEDDS HLGDFIEDRN ALLPIDAAIQ ANLRDTTTRV
LASLTPREER VLRMRFGIGM NTDHTLEEVG QQFSVTRERI RQIEAKALRK LKHPSRSRKL
RSFLDS
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