| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4117 |
|---|
| Symbol | |
|---|
| ID | 4673224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 4398802 |
|---|
| End bp | 4401636 |
|---|
| Gene Length | 2835 bp |
|---|
| Protein Length | 944 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639841155 |
|---|
| Product | SMC domain-containing protein |
|---|
| Protein accession | YP_988294 |
|---|
| Protein GI | 121596398 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCACC TGCAAACCCT GGAACTCGTT CACTGGGACT ACTGCCAGCG CGTGTCGCTG
CCGCTGGACG GCTCCATCAT CACGATTGCG GGGCCCAACG GCTCGGGCAA GACCACGCTG
CTGGACGCCA TGCGCACCCT GCTGGGCCTG CGCTGCTCGG CCCCGCGCGA CTACCGCACC
TATGCGCGCC ACGCCGGCGC GCAGACTGCC TGGCTGCGCG CCGTGGTGGA CAACCGGCCG
CAGGGCCGGC AAAGCTCCAG CCGCCCGTTT GCGCGCCGCC TGCTCTACAG CGACCAGGTC
ACGCTGGCCT GCCGCATCGA CAAGAACGGG GGCGACTGGC AGCGCCGCTA CTGCCTGGTG
GAGGGCGATG TCTCCATCGA GCAGCTGCTG GACATGCCCG AGAAGGACCT GGGCTTCATG
GGCGTGGAGG CCTGGGGCCG CGTGCTGGCC GCCGCCGGCC TGTCGCCGGC GATTGCGCGC
GTGCTCTCGC TGGAGCAGGG CCAGACCGAC CGGCTGTGCG AATTCAGCCC GCGCGAGCTG
CTGCGCCTGG TGTTCGACGT GTTCGGCGAC CAGCAGGTGC TGGACGCCTA CGACCAGGCG
CGTGAGCACC AGCAGCAGCT GGCGCGCGAG ATGGCGCAGG CCGAGCGCGA GCTGGACCAC
AGCCGCGCGC AGCTCTCCGA ACTGCACAAC CGCGTGACCA ACTACAAGAC CTGGCAGATG
CGCCTGGCCG AGCGCGAACG CCTGGCCACC GAGGTACTGC CCGTGCTCGG CTGGTGGGGC
GAGCGCGAGC AGCTCACCAA ACAGTCGCGC GAGTTGCGCC GCCAGAAGGC CCAGCACCGC
GCGGCCCTGG CGGAGCAGGC CGTGCAGAAC AAGCGCCTGC TGCACCTGCT GGAGGAAGGC
ACGCGCGCGC AGCAGCAGGC CGAGCAGTTG CGCGCAGAGC GCGACCAGGC GCGCACGCAG
CTGGACGAGG CCACGCGCCA CGAGGCCCCG CTGGAAAAGC TGGCCCAGCG CGAACAGGAG
CTGCTGGCGC TGGTGGACAA GGGCAGCAAT GCCGAGGAGC TGCAGGCCCA CCTGTCGGCG
CTGCAGGCCC AGGAATCGGC CCTGCAGGAC GAGCGCAGCC AACTCACCCA GCGGCGCAAG
CTGGCCGCCG CGCAGCTCGC CGCGCTCGAA GGCCAGAGCC TGCCGCCGCT GCCGCCCGAG
GTGCTGCGCT TTCGCAAACA GCTGGCCAAC GCCGGCATCG GCCACCGCTT CGTCGCCGAA
ACCGTGGAGG TGCAGGACGA GCGCTGGCGC GCCGCCATCG AGGGCGTGCT GCGCGGCCAC
CGCTGGGTGG TGCTGCTGGA CCAGGCCAAC GACCTGGCCG AGGCCTGGGA GCTGGGCGAG
CGCGAGCGCT ACCGCCACTA CATCGTCGAG CCGGGCAGCG TGGCGCTGAA GGGCGAGAGC
GGCACGCTGC TGGAGCATGT GCGCTTCACC GCGCCCGTGC CGCGCTGGCT GGTGCAGCAA
CTGCAGAACC TGCGCTGCGT GGCCGACCCG CGCGAAGGCA AGAAGCTGGG CGGCACCTGG
ATCACGCCCC ACGCCTACAT GCACGACGGG CGCGGCGCGC GCTCCATGTG GGTGGAGGCG
CATGAGCACC AGTTCGGCGC CAGTGCCGTG CAGGCACGCC GCAGCGCGGC CGAGCGCGAC
CTGGCCCGCA TCGATGCGCA GCTGGCACCC GTGCTGGACC AGCTCATGGC CCTCAAGCGC
CAGATCACCG ACACCCGCCG CGCCCTGGAA GGCCACAGCG CCGCCGAGGA GCTGGCGCGC
CGCAGCGACG AGTTTGGCCA GGCGCGCGAA CAGTTGCCCG CCGCCAAGCA GGCGCGCGTG
GCCGCGGCCC AGCTGTGGCA GCGCCTGGAG CAGGAATCCA CCCGCGCCCA CGACCGCCAC
CGCGCCTTCA ATGAGGAGCA CAAGCGCCTG GAGGCGCAGC TGCAGCGCGC GCGTGGCGAC
AGCGAGCGCG CCGCGCAGGA GTGGAGCGCG CGCCGCCGCC AGCAACAAGG GGCCGTGGCC
CGCAGCCAGG CCCAGCGTGC GCAGTTCCCG GCGCGCTGGA TCACGCCCGC CGCCATGGGC
GCGCTGGTCG ACGAATACGT GAACGACACC CAGGCCAAGC TGCGCCTGCA TGCCGTGGAG
CAGGAACTGG AGCAAGGCAC CTGGGAGCAG GACGCCACCG TGGAAGAACG CCACCGCCGC
ATGGACGTGA CGGTGCGCGA GCAGGCGGCC AGCCTGTCGG ACCACCAGGT CAAGAACGCC
CAGGCCGCCA CGGCGGTGCT GAACGCGCGC GAGAGCTACA TCGAGGTGCT GCGCAGCACG
GTGCGCCGCT ACCGCAAGAA CATCCAGGAG CTGGGCCAGC TGGCCGGTGT GGAAGTGGCG
GCCGACCTCC CCCTGCTGGA GAACGACGAC ACCGTGCTCG CCCAGGCGGG CCTGAAGGTG
CATTTCGCCT TCGACGGCAA GGGCAGCATC GGGCTGAACG ACGGCGAGGC CTCGGGCGGG
CAGCAGGTCA TCAAGTCGCT GATCCTGCTG GTGGGCCTGC TGAAAGACGA GGAAAGCGGC
TCGGGCGGCT TCGTCTTCAT CGACGAGCCC TTCGCCCACC TGGACGTGCG CAACATCCAG
CTCGTGGGCC ACTTCCTGCG CAGCACGCGC GCGCAGTACG TGCTGACCAC GCCCATCACG
CACAACCTGG AGGTGTTCGA GCCCGCCGAG ATCACCCTCG TGACCAGCAA GAAGCCCGCC
GGCAGCCGCT GGGCGCCGCC CATCGCCGTG GCCAAGCGGC GCGGCGTGCC GGAGCTCAAA
CCCCTCAGCG CATGA
|
|---|
| Protein sequence | MFHLQTLELV HWDYCQRVSL PLDGSIITIA GPNGSGKTTL LDAMRTLLGL RCSAPRDYRT
YARHAGAQTA WLRAVVDNRP QGRQSSSRPF ARRLLYSDQV TLACRIDKNG GDWQRRYCLV
EGDVSIEQLL DMPEKDLGFM GVEAWGRVLA AAGLSPAIAR VLSLEQGQTD RLCEFSPREL
LRLVFDVFGD QQVLDAYDQA REHQQQLARE MAQAERELDH SRAQLSELHN RVTNYKTWQM
RLAERERLAT EVLPVLGWWG EREQLTKQSR ELRRQKAQHR AALAEQAVQN KRLLHLLEEG
TRAQQQAEQL RAERDQARTQ LDEATRHEAP LEKLAQREQE LLALVDKGSN AEELQAHLSA
LQAQESALQD ERSQLTQRRK LAAAQLAALE GQSLPPLPPE VLRFRKQLAN AGIGHRFVAE
TVEVQDERWR AAIEGVLRGH RWVVLLDQAN DLAEAWELGE RERYRHYIVE PGSVALKGES
GTLLEHVRFT APVPRWLVQQ LQNLRCVADP REGKKLGGTW ITPHAYMHDG RGARSMWVEA
HEHQFGASAV QARRSAAERD LARIDAQLAP VLDQLMALKR QITDTRRALE GHSAAEELAR
RSDEFGQARE QLPAAKQARV AAAQLWQRLE QESTRAHDRH RAFNEEHKRL EAQLQRARGD
SERAAQEWSA RRRQQQGAVA RSQAQRAQFP ARWITPAAMG ALVDEYVNDT QAKLRLHAVE
QELEQGTWEQ DATVEERHRR MDVTVREQAA SLSDHQVKNA QAATAVLNAR ESYIEVLRST
VRRYRKNIQE LGQLAGVEVA ADLPLLENDD TVLAQAGLKV HFAFDGKGSI GLNDGEASGG
QQVIKSLILL VGLLKDEESG SGGFVFIDEP FAHLDVRNIQ LVGHFLRSTR AQYVLTTPIT
HNLEVFEPAE ITLVTSKKPA GSRWAPPIAV AKRRGVPELK PLSA
|
|---|
| |