Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_4050 |
Symbol | |
ID | 4673078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 4316360 |
End bp | 4317640 |
Gene Length | 1281 bp |
Protein Length | 426 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639841091 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_988230 |
Protein GI | 121596334 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.021914 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGACA CGAGGAACAA TATGGCGGCT CAGGCCCGTA TGCGCGTGAC GGCGCTCGGC GCACTGGCTT TGTTGGCGGG TGCCGCCATG GCACCGGCGG CGCAGGCCCA GAATTACCCG ATTACTTCCG AGCAGCGCGC CACCGCGCAG CAGGTGGCTT CACGCGGCGT TCCCCTGTCC GAATTGGCTG CCAATGCGCC CGATACCTAC GTGGTGAAAC GGGGAGACAC GCTGTGGGGT ATTTCCGGCA TGTATTTGAA GCGCCCCTGG CGCTGGCCGG AACTGTGGGG CATGAATCTG CAGTCCATTC CCAACCCGCA CCTGATTTTC CCGGGCCAGA CGCTGTACCT GGAAAAGGTG GACGGCTATG CCCGCCTGAG CACCAGCCGC AAAGGCGCGC CCGAGACCGT GCGCGTGTCG CCGCGCACGC GCTATGACAG CCTGGCCGGC ACGGCGCTGC CCACGCTCAA GCCGCACCTG ATCGAACCCT TCCTCGTCGA GCCTCTGGTG GTGGACGAGC TCACGCTGCA GCAGGCCCCG CGCATCGTGG CCACGCGCGA CGAACGCATG ATCATGGCCA ACGGCGACCG CGCCTACGTG CGCGGCGCTG AAGGCAGTCC CCTCGTGATG GCGCCTGGCG TGCCGCGCCA GTACCGCGTG TTCCGCAACG CCATTCCGCT GAAGGATCCG CACACTGGTG AGGTGCTGGG CTACGAAGCG CAGTATGTCG GCCGCGCCGA ACTGGTGCGC AGTGAAACTA CCACTCCAGT GCCCCAGAGC GATGTAGCGC GGGGCAAGAG TTCCAGCGAG GGCCGGGGGG AAGTGCTGGA GGGGCAAGCC GACGGCACAG CGGTGGACAT CGTTCCCGCC ACGGTGGACC TGAGGGGCGC GAAGGAAGAG ATCCGCGCCG GCGACCGCCT GCTGCCCGCA CCACAGCGCA GCTTCAACAG CTACACCCCG CGGGCACCGC AGGGCCCCGT GGATGCCAGC GTGGTGTCGA TCTACGGCAG CGCGGCCGTG GCCAACGCCG GCCAGAACCA GGTGATCACC ATCAACCGCG GTACGCGCGA CGGCATGGAA GCCGGCCATG TGCTGCAGCT GCTCACCAAG GGCGAGCGCT TCAAGGACAA GACCGACGAG CAGCGCGCCA TGGTGCGCCT GCCCAGCGAG AGCAATGGCG TGGCGATGGT GTTCCTCACG TTCGACCGCG TGTCCTACGC CCTGATCCTG CAGTCGCAGC AGGCGGTGCG TGTGGGCGAC CGTCTGGTCA ACCCCGAGTA A
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Protein sequence | MNDTRNNMAA QARMRVTALG ALALLAGAAM APAAQAQNYP ITSEQRATAQ QVASRGVPLS ELAANAPDTY VVKRGDTLWG ISGMYLKRPW RWPELWGMNL QSIPNPHLIF PGQTLYLEKV DGYARLSTSR KGAPETVRVS PRTRYDSLAG TALPTLKPHL IEPFLVEPLV VDELTLQQAP RIVATRDERM IMANGDRAYV RGAEGSPLVM APGVPRQYRV FRNAIPLKDP HTGEVLGYEA QYVGRAELVR SETTTPVPQS DVARGKSSSE GRGEVLEGQA DGTAVDIVPA TVDLRGAKEE IRAGDRLLPA PQRSFNSYTP RAPQGPVDAS VVSIYGSAAV ANAGQNQVIT INRGTRDGME AGHVLQLLTK GERFKDKTDE QRAMVRLPSE SNGVAMVFLT FDRVSYALIL QSQQAVRVGD RLVNPE
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