| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4022 |
|---|
| Symbol | |
|---|
| ID | 4672094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 4288326 |
|---|
| End bp | 4289498 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639841062 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_988202 |
|---|
| Protein GI | 121596306 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.780048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCC TGACACCGAC CCGCACCCTG ATCGCCCTGG CTTTGCTGGG GCTTGCCGCG
ACCACCGCCG TCCTGCTGGG CAGCGGCCCC ACCCATGCCG AGGACTCCGC ACAGGCCGAG
GGGCCCCGCC CCGCCCTCAC CGTGGCCACC ACCCAGCCGC AGCGCGGCAA CGTGACCCAG
CGGCTGCCGG CCAACGGCAA CGTGGCCGCG TGGCAGGAGG CCAGCATTGG CGCCGAGGTG
AGCGGCCTGC GGCTGACCGA CGTGCGCGTG AACGTGGGCG ACACGGTGCG CGCCGGCCAG
GTGCTGGCCA CCTTCGCGCC CGAGACCATC GAGGCCGACG TGGCCCAGGC CCGCGCCAGC
CTGCTGGAGG CCCGCGCCGC CCAGGCCGAG GCGCAGGCCA ACGCCGACCG CGCCAACACC
CTGAGCGCCT CGGGCGCGCT GAGCCAGCAG CAGATCCAGC AATACGCCAC CGGCGCGCAG
ACCGCGCAGG CCCGCATGGC GGCGGCACAG GCGGCGCTCA ACGCCCAGCA GCTGCGCCTG
AAACACACCC AGGTATTGGC GCCCGACAGT GGCGTGATCT CCGCGCGCAC GGCCACCGTG
GGCGCGGTGG TGGGTGCAGG CACCGAGCTG TTTCGCATGG TGCGCAAGGG CCGGCTGGAG
TGGCGCGCGG AGGTCACCTC CAGCGAGTTG CCCCGCATCC GTCCCGGTGC CAAGGCGGTG
GTGACGGCCG CCAGCGGCGC GCAGGTGGAA GGCACGGTGC GCATGCTGGC CCCGACGGTG
GACCCGCAGA CGCGCAATGC GCTGGTGTAC GTGGACCTGC CGGCGCACCG CGAGATAAGG
GCGGGCATGT TCGCGCGCGG CGAGTTCCTG TTGGGCGAGC GCGACGCGCT GCTGGTGCCC
CTGTCGGCCG TGGTGGTGCG CGACGGCTTC TCGCACGTGT TCGAGGTAGG CAAGGACTCG
CGCGTGGCCA TGCACCGCGT GCAGACCGGT GCGCGCAGCG GCGAGCGCGT GGCCATCACC
TCGGGCCTGG CGCCCCAGGC GCGCATCGTG GCGCGCGGCG GCGCCTTCCT GAACGACGGC
GACCTGGTGC GCGTGCAGGC TGCGCCTGCC GCAGATTCAG CACCAAAAGA GGCTGCAGCG
CCCGTCCCTC AAGCGCAAGC AGCTAGCAAA TAA
|
|---|
| Protein sequence | MPRLTPTRTL IALALLGLAA TTAVLLGSGP THAEDSAQAE GPRPALTVAT TQPQRGNVTQ
RLPANGNVAA WQEASIGAEV SGLRLTDVRV NVGDTVRAGQ VLATFAPETI EADVAQARAS
LLEARAAQAE AQANADRANT LSASGALSQQ QIQQYATGAQ TAQARMAAAQ AALNAQQLRL
KHTQVLAPDS GVISARTATV GAVVGAGTEL FRMVRKGRLE WRAEVTSSEL PRIRPGAKAV
VTAASGAQVE GTVRMLAPTV DPQTRNALVY VDLPAHREIR AGMFARGEFL LGERDALLVP
LSAVVVRDGF SHVFEVGKDS RVAMHRVQTG ARSGERVAIT SGLAPQARIV ARGGAFLNDG
DLVRVQAAPA ADSAPKEAAA PVPQAQAASK
|
|---|
| |