Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_4005 |
Symbol | secD |
ID | 4671625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 4260516 |
End bp | 4262414 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639841045 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_988185 |
Protein GI | 121596289 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGTT ATCCGGTCTG GAAGTACGCG ATCCTGGTGA TCGTGTTGCT CATTGGGGCC CTGTATACCC TGCCCAACTT CTTTGGCGAG GCGCCCGCGG TGCAGGTGTC GTCGGCCAAG GCCACGCTGA AGGTCGACGC CGCGGTCCAG CAGCGCGTCG AGGACGCGTT GAAAGCCGCC AACGTGGCCT CGGACTCCAT CGTGTTCGAC GGCAACTCGG TGCGCGCGCG CTTTGACACG CCGGACAACC AGCTCAAGGC CAAGGACGCG ATCGAGAAGG CCCTGATCCC CGACCCGAGC GATCCTTCCT ACATCGTGGC GCTGAACCTC GTGTCGCGCT CGCCCGACTG GCTCACCGCG CTGCATGCAC GGCCCATGTA CCTCGGCCTG GACCTGCGCG GCGGCGTGCA CTTCATGCTG CAGGTGGACA TGCAGGCGGC GATCACGAAG AAGATCGAGT CGTACGCAGG CGACCTGCGC AGCGCGCTGC GCGAGAAGAA CATCCGGCAC GGCGGCATCG GCCGCGAAGG GCAGGCCGTG GACATCCGCG TGCGCGACGA GGCCACGCTC ACGGCGGCAC GCAACCTGAT CGCCGACCAG TTCCCGGACC TGGCGGTCGT GAGCAGCGCC GACGGCGACG GTATGCGCCT GCGCGCCACC ATCAAGCCCG AGGCCCTGCG CAAGGTGCAA GAGCAGGCCT TGAAGCAGAA CATGGTCACG CTGCACAACC GTATCAACGA ACTGGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCCTG GACCGCATCG TGGTGCAGCT GCCCGGCGTG CAGGACACGG CCAAGGCCAA GGACATCCTG GGCCGCACCG CCACGCTGGA AGTGCGCATG GTGGACGAGG GCACCGAGGC GCGCGCCGCC GAAATGGGAA CGGGCCCCGT GCCGTTCGGT GCCGAGAAAT ACCTGGACCG CAATGGCCAG GCCGTGATCG TGAAGAAGCA GGTCGTGCTG ACCGGCGAGA ACCTCACCGA CGCGCAGCCA GGATTCGACG GCCAGACCCA GGAGCCCACC GTGAACCTCA CGCTGGACGC CAAGGGCTCG CGCATCTTCA AGGACATCAC GCGCGAGAAC GTGGGCAAGC GCATGGCCAT CGTGCTGTTC GAAAAGGGCA AGGGCGAGGT GGTGACCGCG CCCGTGATCC GCAGCGAGAT TGGCGGTGGT CGCGTGCAGA TCTCCGGCCG CATGACCACG GCCGAGGCCA ACGACACCGC ACTGCTGCTG CGCGCCGGCT CGCTGGCCGC GCCCATGGAG ATCATCGAGG AATACACCAT CGGCCCGAGC CTGGGTGCCG ACAACATCGA ACGGGGTATC CAGTCGGTGG TCTGGGGCAT GGTGGCCATC GCGGCCTTCA TGTGCGTGTA CTACAGGCTG TTCGGCGTGT TCTCCACGAT CGCGCTGGGC GTGAACGTGC TGCTGCTGAT CGCCATCCTG TCGATGCTGC AGGCCACGCT GACCCTGCCC GGCATCGCCG CCATGGCCCT GGCGCTGGGC GTGGCCATCG ACTCCAACGT GCTGATCAAC GAGCGCATCC GCGAGGAACT GCGCGCTGGC GTGGCCCCGC AGGCGGCGAT CGCCACGGGC TACGAGCGCG CCTGGGCCAC CATCCTGGAC TCCAACGTCA CCACGCTGAT TGCGGGCCTG GCGCTGCTGG CCTTCGGCAC GGGGCCGGTG CGCGGCTTTG CCGTGGTGCA CTGCATCGGC ATCCTGACCA GCATGTTCTC GGCGGTGTTC TTCTCGCGTG GCCTGGTCAA CCTCTGGTAT GGCCGCAAGA AGAAGCTCAA GAGCGTGTCC ATCGGCCAGG TGTGGAAGCC CGAGGGCGAT GAGCACCGCT CGGTGGCTGC CCGCGGCAAC AGCAACTAA
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Protein sequence | MNRYPVWKYA ILVIVLLIGA LYTLPNFFGE APAVQVSSAK ATLKVDAAVQ QRVEDALKAA NVASDSIVFD GNSVRARFDT PDNQLKAKDA IEKALIPDPS DPSYIVALNL VSRSPDWLTA LHARPMYLGL DLRGGVHFML QVDMQAAITK KIESYAGDLR SALREKNIRH GGIGREGQAV DIRVRDEATL TAARNLIADQ FPDLAVVSSA DGDGMRLRAT IKPEALRKVQ EQALKQNMVT LHNRINELGV AEPVIQQQGL DRIVVQLPGV QDTAKAKDIL GRTATLEVRM VDEGTEARAA EMGTGPVPFG AEKYLDRNGQ AVIVKKQVVL TGENLTDAQP GFDGQTQEPT VNLTLDAKGS RIFKDITREN VGKRMAIVLF EKGKGEVVTA PVIRSEIGGG RVQISGRMTT AEANDTALLL RAGSLAAPME IIEEYTIGPS LGADNIERGI QSVVWGMVAI AAFMCVYYRL FGVFSTIALG VNVLLLIAIL SMLQATLTLP GIAAMALALG VAIDSNVLIN ERIREELRAG VAPQAAIATG YERAWATILD SNVTTLIAGL ALLAFGTGPV RGFAVVHCIG ILTSMFSAVF FSRGLVNLWY GRKKKLKSVS IGQVWKPEGD EHRSVAARGN SN
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