Gene Ajs_4005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_4005 
SymbolsecD 
ID4671625 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp4260516 
End bp4262414 
Gene Length1899 bp 
Protein Length632 aa 
Translation table11 
GC content67% 
IMG OID639841045 
Productpreprotein translocase subunit SecD 
Protein accessionYP_988185 
Protein GI121596289 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGTT ATCCGGTCTG GAAGTACGCG ATCCTGGTGA TCGTGTTGCT CATTGGGGCC 
CTGTATACCC TGCCCAACTT CTTTGGCGAG GCGCCCGCGG TGCAGGTGTC GTCGGCCAAG
GCCACGCTGA AGGTCGACGC CGCGGTCCAG CAGCGCGTCG AGGACGCGTT GAAAGCCGCC
AACGTGGCCT CGGACTCCAT CGTGTTCGAC GGCAACTCGG TGCGCGCGCG CTTTGACACG
CCGGACAACC AGCTCAAGGC CAAGGACGCG ATCGAGAAGG CCCTGATCCC CGACCCGAGC
GATCCTTCCT ACATCGTGGC GCTGAACCTC GTGTCGCGCT CGCCCGACTG GCTCACCGCG
CTGCATGCAC GGCCCATGTA CCTCGGCCTG GACCTGCGCG GCGGCGTGCA CTTCATGCTG
CAGGTGGACA TGCAGGCGGC GATCACGAAG AAGATCGAGT CGTACGCAGG CGACCTGCGC
AGCGCGCTGC GCGAGAAGAA CATCCGGCAC GGCGGCATCG GCCGCGAAGG GCAGGCCGTG
GACATCCGCG TGCGCGACGA GGCCACGCTC ACGGCGGCAC GCAACCTGAT CGCCGACCAG
TTCCCGGACC TGGCGGTCGT GAGCAGCGCC GACGGCGACG GTATGCGCCT GCGCGCCACC
ATCAAGCCCG AGGCCCTGCG CAAGGTGCAA GAGCAGGCCT TGAAGCAGAA CATGGTCACG
CTGCACAACC GTATCAACGA ACTGGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCCTG
GACCGCATCG TGGTGCAGCT GCCCGGCGTG CAGGACACGG CCAAGGCCAA GGACATCCTG
GGCCGCACCG CCACGCTGGA AGTGCGCATG GTGGACGAGG GCACCGAGGC GCGCGCCGCC
GAAATGGGAA CGGGCCCCGT GCCGTTCGGT GCCGAGAAAT ACCTGGACCG CAATGGCCAG
GCCGTGATCG TGAAGAAGCA GGTCGTGCTG ACCGGCGAGA ACCTCACCGA CGCGCAGCCA
GGATTCGACG GCCAGACCCA GGAGCCCACC GTGAACCTCA CGCTGGACGC CAAGGGCTCG
CGCATCTTCA AGGACATCAC GCGCGAGAAC GTGGGCAAGC GCATGGCCAT CGTGCTGTTC
GAAAAGGGCA AGGGCGAGGT GGTGACCGCG CCCGTGATCC GCAGCGAGAT TGGCGGTGGT
CGCGTGCAGA TCTCCGGCCG CATGACCACG GCCGAGGCCA ACGACACCGC ACTGCTGCTG
CGCGCCGGCT CGCTGGCCGC GCCCATGGAG ATCATCGAGG AATACACCAT CGGCCCGAGC
CTGGGTGCCG ACAACATCGA ACGGGGTATC CAGTCGGTGG TCTGGGGCAT GGTGGCCATC
GCGGCCTTCA TGTGCGTGTA CTACAGGCTG TTCGGCGTGT TCTCCACGAT CGCGCTGGGC
GTGAACGTGC TGCTGCTGAT CGCCATCCTG TCGATGCTGC AGGCCACGCT GACCCTGCCC
GGCATCGCCG CCATGGCCCT GGCGCTGGGC GTGGCCATCG ACTCCAACGT GCTGATCAAC
GAGCGCATCC GCGAGGAACT GCGCGCTGGC GTGGCCCCGC AGGCGGCGAT CGCCACGGGC
TACGAGCGCG CCTGGGCCAC CATCCTGGAC TCCAACGTCA CCACGCTGAT TGCGGGCCTG
GCGCTGCTGG CCTTCGGCAC GGGGCCGGTG CGCGGCTTTG CCGTGGTGCA CTGCATCGGC
ATCCTGACCA GCATGTTCTC GGCGGTGTTC TTCTCGCGTG GCCTGGTCAA CCTCTGGTAT
GGCCGCAAGA AGAAGCTCAA GAGCGTGTCC ATCGGCCAGG TGTGGAAGCC CGAGGGCGAT
GAGCACCGCT CGGTGGCTGC CCGCGGCAAC AGCAACTAA
 
Protein sequence
MNRYPVWKYA ILVIVLLIGA LYTLPNFFGE APAVQVSSAK ATLKVDAAVQ QRVEDALKAA 
NVASDSIVFD GNSVRARFDT PDNQLKAKDA IEKALIPDPS DPSYIVALNL VSRSPDWLTA
LHARPMYLGL DLRGGVHFML QVDMQAAITK KIESYAGDLR SALREKNIRH GGIGREGQAV
DIRVRDEATL TAARNLIADQ FPDLAVVSSA DGDGMRLRAT IKPEALRKVQ EQALKQNMVT
LHNRINELGV AEPVIQQQGL DRIVVQLPGV QDTAKAKDIL GRTATLEVRM VDEGTEARAA
EMGTGPVPFG AEKYLDRNGQ AVIVKKQVVL TGENLTDAQP GFDGQTQEPT VNLTLDAKGS
RIFKDITREN VGKRMAIVLF EKGKGEVVTA PVIRSEIGGG RVQISGRMTT AEANDTALLL
RAGSLAAPME IIEEYTIGPS LGADNIERGI QSVVWGMVAI AAFMCVYYRL FGVFSTIALG
VNVLLLIAIL SMLQATLTLP GIAAMALALG VAIDSNVLIN ERIREELRAG VAPQAAIATG
YERAWATILD SNVTTLIAGL ALLAFGTGPV RGFAVVHCIG ILTSMFSAVF FSRGLVNLWY
GRKKKLKSVS IGQVWKPEGD EHRSVAARGN SN