| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4004 |
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| Symbol | secF |
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| ID | 4671620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 4259548 |
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| End bp | 4260501 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639841044 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_988184 |
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| Protein GI | 121596288 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.833906 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGTTTT TCCGCATCAA AAAAGACATC CCGTTCATGA AGTACGCGTT GGTGCTCAAC
GCGGTGTCTT TCATCACTTT CGCGCTGGCG GTGTTCTTCC TGGTCACGCG GGGCCTGCAC
CTGTCGGTGG AGTTCACGGG TGGCACCGTC ATGGAGGTGG CCTACACGCA GACGGCCGAC
ATCGGCAAGG TGCGCGACAC CGTCGCGGGC CTGGGCTATG CCGACGTGGT GGTGCAGAAC
TTCGGCACCT CGCGCGACGT GATGATCCGC CTGCCCGTGC AAAAGGGCGT CACCTCCGCC
CAGCAAAGCG AGCAGGTGCT GAGCGCGCTG AAGGCGCAGG ACCCCGAGGT CACGCTGCGG
CGCACCGAGT TCGTGGGCCC GCAGGTGGGC GAAGAACTGG TGCACAGCGG CCTGATGGCG
CTGGGCATGG TGGTGCTGGG CATCGTGATC TACCTGGCCT TCCGCTTCGA GTGGAAGTTC
GGCGTGGCAG CGGTGATCGC CAACCTGCAC GACGTGGTCA TCATTCTGGG CTTCTTTGCG
TTCTTCCAAT GGGAGTTCTC GCTGTCGGTG CTGGCCGGCG TGCTGGCCGT GCTGGGCTAT
TCGGTGAACG AGTCGGTGGT GATCTTCGAC CGTATCCGCG AGGCCTTCCG CAAGTTCCGC
AAGCTCAACA CGCATGAGGT GATCGACCAC GCCATCACCT CCACCATGAG CCGCACCATC
ATCACCCATG CCTCCACCGA GGCCATGGTG CTGTCCATGT TCTTCTTCGG GGGCCCCAGC
CTGCACTACT TCGCACTGGC GCTGACCATC GGCATCCTGT TCGGCATCTA CTCGTCGGTG
TTCGTTGCCG CGGCCATCGC CATGTGGCTG GGCGTCAAGC GCGAAGACCT GGTCAAGGCG
CCGACCCGCA AGGAAGGCGA CCCGGCCGAC CCGAACTCCG GCGCCGTGGT CTGA
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| Protein sequence | MEFFRIKKDI PFMKYALVLN AVSFITFALA VFFLVTRGLH LSVEFTGGTV MEVAYTQTAD
IGKVRDTVAG LGYADVVVQN FGTSRDVMIR LPVQKGVTSA QQSEQVLSAL KAQDPEVTLR
RTEFVGPQVG EELVHSGLMA LGMVVLGIVI YLAFRFEWKF GVAAVIANLH DVVIILGFFA
FFQWEFSLSV LAGVLAVLGY SVNESVVIFD RIREAFRKFR KLNTHEVIDH AITSTMSRTI
ITHASTEAMV LSMFFFGGPS LHYFALALTI GILFGIYSSV FVAAAIAMWL GVKREDLVKA
PTRKEGDPAD PNSGAVV
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