| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3999 |
|---|
| Symbol | |
|---|
| ID | 4671139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 4253850 |
|---|
| End bp | 4254524 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639841039 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_988179 |
|---|
| Protein GI | 121596283 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.901243 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCC TCATCGCCGA AGACGACCAG GTGCTTGCCG ACGGGCTGCT GCGCACGCTG
CGCGGCTCGG GCGCCGTGGT GGACCATGTG GCCAGCGGCA CCGAGGTCGA TACCGCGCTC
CTGACCAACA ACGAGTTCGA CCTGCTGATC CTCGACCTGG GCCTGCCCAA GATGCACGGC
CTGGAGGTGC TCAAGCGCCT GCGCGGGCGC GGCTCGGCGC TGCCGGTGCT GATCCTCACG
GCGGCCGACA GCGTGGACGA GCGCGTGAAG GGCCTGGACC TGGGCGCCGA CGACTACATG
GCCAAGCCGT TCGCGCTGTC GGAGCTGGAG GCGCGCGTGC GTGCGCTCAC GCGCCGCGGC
ATGGGCGGCA CCAGCAGCGC CATCCGCCAC GGGCCCCTGG TGTACGACCA GGCGGGCCGC
GTGGCCACCA TCGACGGCAA GATGGTGGAG CTGTCCGCGC GCGAGCTGGG CCTGCTGGAG
GTGCTGCTGC AGCGCGCCGG CCGCCTGGTG AGCAAGGAGC AACTGGTGGA GCGCCTGTGC
GAGTGGGGCG AGGAGGTGAG CAACAACGCC ATCGAGGTCT ACATCCACCG CCTGCGCAAG
AAGATCGAGC GCGGGCCGAT CCGCATCGCC ACCGTGCGCG GCCTGGGCTA CTGCCTGGAA
AAGATCCCCG GCTGA
|
|---|
| Protein sequence | MRILIAEDDQ VLADGLLRTL RGSGAVVDHV ASGTEVDTAL LTNNEFDLLI LDLGLPKMHG
LEVLKRLRGR GSALPVLILT AADSVDERVK GLDLGADDYM AKPFALSELE ARVRALTRRG
MGGTSSAIRH GPLVYDQAGR VATIDGKMVE LSARELGLLE VLLQRAGRLV SKEQLVERLC
EWGEEVSNNA IEVYIHRLRK KIERGPIRIA TVRGLGYCLE KIPG
|
|---|
| |