Gene Ajs_3998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_3998 
Symbol 
ID4671136 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp4252325 
End bp4253806 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content70% 
IMG OID639841038 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_988178 
Protein GI121596282 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.613719 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATAAGC GCTCGCGGCC AAAAACACCC ACCACCTTGA AAATCTTCCA GCGCGAGCAG 
CGCTCCCTCT TCGGCGAAAT CCTGGACTGG ATGCTCACGC CGCTGCTGCT GCTGTGGCCG
GTGAGCCTGG CGCTGACCTG GCTGGTGGCC CAGGGCCTGG CCAACAAGCC CTTCGACCGC
GCGCTGGAGT ACAACGCCCA TGCGTTGGCG CAGCTCGTCA CGGTGCACGA CGGCAAGGTG
CTGTTCAACC TGCCCCAGCC CGCCAGCGAG ATCCTGCGTG CCGACGAGTC CGACATCGTT
TATTACCAGG TGCTCTCGCC CACGGGCGAC TACCTCTCGG GCGAGCGCGA CCTGCCGCGC
CCGCCGCCCG AGGAGCAGGC GTTCTCCGGC GAGGTGCGGC TGCGCGACGC CGAGCTGCGC
GGCATCGACA TCCGCGTGGC CTACATCTGG GTGCGCGTGC CGCTGCCCGA CGCGCCCGCC
GCGCTGGTGC AGGTGGCCGA GACACGCGCC AAGCGCAGCG TGCTGGCCAC CGAGATCATC
AAGGGCGTGA TGCTGCCGCA GTTCGTCATC CTGCCGCTGG CGGTGCTGCT GGTGTGGCTG
GCGCTGGCGC GCGGCATCAA GCCGCTGCAC CAGCTGGAGG AGCGCATTCG CGCGCGCAAG
CCCGACGACC TCTCGCCGCT GGACCACAAG GCCGTGCCGA TGGAAGTGGC GCCGCTGGTG
GATTCGGTGA ACGACCTGCT GCGCCGCCTG TCGGAATCCA TGGCCACGCA AAAGCGCTTC
CTGGCCGACG CCGCGCACCA GCTCAAGACC CCCCTGGCCG GGCTGCGCAT GCAGGCCGAC
CTGGCGCAGC GCGAGGGCAC CAGCACCGAG GAGCTCAAGC AGTCGCTCAA GCAGATCGGG
CGTTCGTCCA TCCGCGCCAC GCACACCGTC AACCAGTTGC TGGCGCTGGC GCGGGCCGAG
GGCGGCAGCG CCGTGGTGCA GCGCCAGCCG CTGGACCTGG CGCGGCTGGT GATCGAGGTG
GTGCGCGACA GCGTGCCGCG CGCCATGGAC AAGCACATCG ACCTGGGCTA CGACGGCGTC
GAGCCCGGCA CCAATGGCGT GTGGATGGAC GGCAACCCCA CGCTGCTGAA GGAACTGGTG
CGCAACCTGG TGGACAACGC CATCAACTAC ACCCCATCCA GCGCGCAGCA GCCCGGCGTG
ATCACCGCGC GCGTGCTGCC CGACCCGTTC AGCCATGTGC TGCTGCTGCA GGTGGAGGAC
TCGGGGCCCG GCGTGCCCGA GGCTGAGCGC GAACTGGTCT TCCAGCCCTT CTACCGCGCG
CTGGGGACGG ACGCCGACGG CTCCGGCCTG GGCCTGCCCA TCGTGCGCGA GATCGCGCGC
CAGCACGGCG CCGAGGTGGA ACTGGAAGAC GTGCGCCCCG GCGCGGCCAT GCCCGGCGCG
CGCTTCAGCG TGCGGTTCAC GGCACGCGAA TCGGGGCCAT AG
 
Protein sequence
MHKRSRPKTP TTLKIFQREQ RSLFGEILDW MLTPLLLLWP VSLALTWLVA QGLANKPFDR 
ALEYNAHALA QLVTVHDGKV LFNLPQPASE ILRADESDIV YYQVLSPTGD YLSGERDLPR
PPPEEQAFSG EVRLRDAELR GIDIRVAYIW VRVPLPDAPA ALVQVAETRA KRSVLATEII
KGVMLPQFVI LPLAVLLVWL ALARGIKPLH QLEERIRARK PDDLSPLDHK AVPMEVAPLV
DSVNDLLRRL SESMATQKRF LADAAHQLKT PLAGLRMQAD LAQREGTSTE ELKQSLKQIG
RSSIRATHTV NQLLALARAE GGSAVVQRQP LDLARLVIEV VRDSVPRAMD KHIDLGYDGV
EPGTNGVWMD GNPTLLKELV RNLVDNAINY TPSSAQQPGV ITARVLPDPF SHVLLLQVED
SGPGVPEAER ELVFQPFYRA LGTDADGSGL GLPIVREIAR QHGAEVELED VRPGAAMPGA
RFSVRFTARE SGP