| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3990 |
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| Symbol | |
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| ID | 4671076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 4242552 |
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| End bp | 4245497 |
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| Gene Length | 2946 bp |
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| Protein Length | 981 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639841030 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_988170 |
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| Protein GI | 121596274 |
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| COG category | [B] Chromatin structure and dynamics
[L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG5531] SWIB-domain-containing proteins implicated in chromatin remodeling |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.250381 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.105693 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAAA CACTGGTAAT TGCAGAAAAG CCCTCGGTGG CGCAGGACAT CGTGCGCGCC
CTCACGCCGG TTGCCGGCAA GTTCGAGAAG CACGAGGACC ATTTCGAGAA TGAGCGCTAC
GTGGTCACCA GCGCCGTGGG CCACCTGGTG GAGATCCAGG CGCCCGAGGA ATTCGACGTC
AAGCGCGGCA AGTGGAGCTT TGCCCATCTG CCGGTGATCC CGCCGTATTT CGACCTGAAG
CCCGTGGACA AGACCAAGAG CCGCCTGAAC GCGGTGGTCA AGCAGGCCAG GCGCAAGGAC
GTGACCGAGC TTGTGAACGC CTGTGACGCG GGCCGCGAGG GCGAGCTGAT CTTCCGCCTG
ATCGAGCAGT ACGCCGGCGG CGCCAAGGGC GGGCTGGGCA AGCCCGTGAA GCGCCTGTGG
CTGCAGAGCA TGACGCCCCA GGCCATCCGC GACGGCTTCG AGAACCTGCG CAGCGACCAG
CAGATGCAGG GCCTGGCCAG CGCCGCGCGC AGCCGCTCAG AGGCCGACTG GCTGGTGGGC
ATCAACGGCA CGCGCGCCAT GACGGCCTTC AACTCGCGCG ACGGCGGGTT CTTTTTGACC
ACCGTGGGCC GCGTGCAGAC GCCCACGCTG TCGCTGGTGG TGGAGCGCGA GGAAAAAATC
CGCAAGTTCG TCAGCCGCGA CTACTGGGAA ATCCACGCTG GCTTCCATGC CGAGGCGGGC
GAATACCTGG GCAAGTGGTT CGACCCGAAG TGGAAGAAGA GCGACGACCC CGAGGCCCGC
GCCGACCGCG TCTGGTCGTA CCACCAGGCC AAGGACATCG CCGACGCCGT GCGCGGCAAG
GCCGCCACCG TCACCGAGGA AAGCAAGCCC ACCACCCAGG CATCGCCGCT GCTGTTCGAC
CTGACCAGCC TGCAGCGCGA GGCCAACGGC AAGTTCGGCT TCTCCGCCAA GACCACGCTG
GCCCTGGCGC AAAGCCTGTA CGAGCGCCAC AAGGCGCTGA CCTACCCGCG TACCGACTCG
CGCGCGCTGC CCGAGGACTA CCTGCCCGTG GCCAGGCAGA CCTTTGGCAT GCTGGCCGGC
AGCGGCATGC GCCACCTGGC GCCGTTTGCG CAGCAGGCGC TGGACGACGG CTACGTGCGC
CCGTCCAAGC GCATCTTCGA CAACAGCAAG GTGAGCGACC ACTTTGCCAT CATCCCCACC
ACGCAGGCCC CCAGCGGCCT GTCCGAGGCC GAGCAAAAGC TCTACGACCT GGTGGTGCGC
CGCTTCATGG CGGTGTTCTT CCCCAGTGCC GAATACCAGG TCACCACGCG CATCAGCCAG
GTGGTGGGTC ACTCGTTCAA GACCGAGGGC AAGGTGCTGG TCAAGCCCGG CTGGCTGGCC
ATCTACGGCA AGGAAGCCGC CAACGAGGTC GAAGACGGCA AGGCCGGCGA CAAGGGCCAG
CCGCTGGTGC CCGTCAAGCC CGGCGAGATG ACCCACACCG AGTTCGCCGA GGCCAAGGGC
CTGAAAACCA AGCCGCCCGC GCGCTACTCC GAAGCCACGC TGCTCGGCGC CATGGAAAGC
GCCGGCAAGC AGATCGACGA CGACGAACTG CGCGAAGCCA TGCAGGAGAA AGGCCTGGGC
ACGCCGGCCA CGCGCGCGGC CATCATCGAA GGCCTGCTGA CCGAAAAATA CATGCTGCGC
GAGGGCCGCG AGCTGATCCC CACCGCCAAG GCCTTCCAGC TCATGACGCT GCTGCGCGGC
CTGGATGTGC AGGAGCTGTG CCGCGCCGAC CTGACGGGCG AGTGGGAATT CAAACTCGCG
CAAATGGAAA AGGGCCAGCT GAGCCGCGAA GCCTTCATGC AGCAGATCCA GGCCATGACC
GAAAAGCTGG TCAAGAAGGC CAAGGAATAC GACCGCGACA CCATCCCCGG CGACTACGCC
ACGCTGTCCA CGCCGTGCCC CAACTGCGGC GGCGTGGTGA AGGAGAACTA CCGCCGCTAC
GCCTGCACGG GCGCGAACGG CGCGGGCGAG GGCTGCGGCT TCTCGTTCAC CAAGTCGCCC
GCGGGCCGCA CGTTTGAAAC CGCCGAGGCC GAACAGCTAT TGCGCGACCG CCGCATCGGC
CCGCTGGAGG GCTTCCGCTC CAAGGCCGGC TGGCCCTTCG TGGCCGAAGT CACCATTGCC
CGCGACGAAG AGGCGGGCAA CTACAAGCTC GAATTCGACT TTGGCGACGA CAAGAACGCC
GAGGAATCGG GCGAGATCGT GGACTTTGCC GGCCAGGAAA GCTTAGGTGC CTGCCCCAGC
TGCGGCGCCC CCGTGTACGA ACACGGCAGC AACTACGTGT GCAGCAAATC CGTGCCCACC
GCCCAGCAGC CCACGCCGTC GTGCACCTTC AAGAGCGGCA AGGTCATCCT GCAGCAGCCC
GTGGAGCGCG CGCAGATGCA AAAGCTGCTG GCCACCGGCA AGACCGACCT GCTGGACAAG
TTCGTCAGCA TGCGCACGCG CCGCGCGTTC AAGGCCTTCC TGGCCTGGGA CAAGGAGGCG
GGCAAGGTCA ACTTCGAGTT CGAGCAGCGC GAATCCAAAT ACCCGCCGCG CAAGACGGCT
GCTGCAAAAA CAGGAGCTGC CAGCGCACGT GGGACGGGCG CTGGAGCCGT AAAAGCCTCT
AAGCCTGCCA CCAAGGCCGC CGCCAAGAAG GCCGCCGCCA AAACCACGGC CGCCAAGACC
CCGCGCAAGG CCAGCACCGC CGCTGGCAAG GCGCCCAGCG CCCAGTTGGC CGCCGTGATT
GGCACTGAAC CCGTGGCGCG CCCCGAGGCC GTCAAGAAGA TGTGGGACTA CATCAAGGCC
CACAACCTGC AGGACCCGCA GGACAAGCGC ACCATCGTCG CCGACGACAA GCTGCGCGCC
GTCTTCGGCA AGGACCGCAT CGGCATGTTC GAGCTGGCCG GCATCCTGGG CCAGCACCTG
GCCTGA
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| Protein sequence | MTKTLVIAEK PSVAQDIVRA LTPVAGKFEK HEDHFENERY VVTSAVGHLV EIQAPEEFDV
KRGKWSFAHL PVIPPYFDLK PVDKTKSRLN AVVKQARRKD VTELVNACDA GREGELIFRL
IEQYAGGAKG GLGKPVKRLW LQSMTPQAIR DGFENLRSDQ QMQGLASAAR SRSEADWLVG
INGTRAMTAF NSRDGGFFLT TVGRVQTPTL SLVVEREEKI RKFVSRDYWE IHAGFHAEAG
EYLGKWFDPK WKKSDDPEAR ADRVWSYHQA KDIADAVRGK AATVTEESKP TTQASPLLFD
LTSLQREANG KFGFSAKTTL ALAQSLYERH KALTYPRTDS RALPEDYLPV ARQTFGMLAG
SGMRHLAPFA QQALDDGYVR PSKRIFDNSK VSDHFAIIPT TQAPSGLSEA EQKLYDLVVR
RFMAVFFPSA EYQVTTRISQ VVGHSFKTEG KVLVKPGWLA IYGKEAANEV EDGKAGDKGQ
PLVPVKPGEM THTEFAEAKG LKTKPPARYS EATLLGAMES AGKQIDDDEL REAMQEKGLG
TPATRAAIIE GLLTEKYMLR EGRELIPTAK AFQLMTLLRG LDVQELCRAD LTGEWEFKLA
QMEKGQLSRE AFMQQIQAMT EKLVKKAKEY DRDTIPGDYA TLSTPCPNCG GVVKENYRRY
ACTGANGAGE GCGFSFTKSP AGRTFETAEA EQLLRDRRIG PLEGFRSKAG WPFVAEVTIA
RDEEAGNYKL EFDFGDDKNA EESGEIVDFA GQESLGACPS CGAPVYEHGS NYVCSKSVPT
AQQPTPSCTF KSGKVILQQP VERAQMQKLL ATGKTDLLDK FVSMRTRRAF KAFLAWDKEA
GKVNFEFEQR ESKYPPRKTA AAKTGAASAR GTGAGAVKAS KPATKAAAKK AAAKTTAAKT
PRKASTAAGK APSAQLAAVI GTEPVARPEA VKKMWDYIKA HNLQDPQDKR TIVADDKLRA
VFGKDRIGMF ELAGILGQHL A
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