Gene Ajs_3923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_3923 
Symbol 
ID4674023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp4178830 
End bp4179381 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content67% 
IMG OID639840965 
ProductSmpA/OmlA domain-containing protein 
Protein accessionYP_988105 
Protein GI121596209 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2913] Small protein A (tmRNA-binding) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATAAAC CCATGTTTGC ACCCGCCCGT TGGGGCGCCC GCTGGGGCGC CATTGTGTTG 
ATTGGTGCCG GGATGGCCGG CTGCGCGGGC ACCGGCAGTC GCCTGGCCGG CATGGTCACG
CCCTACAAGG TGGACGTGGT GCAGGGCAAC TTCATCTCGC GCGAGCAGGT GCAGATGTTG
CAGCCTGGCA TGGGCCGCCA GCAGGTGCGT GAGATCCTGG GCACACCCCT CATGGTGAGC
GTGTTCCACT CCGACCGCTG GGAATACGTC TTCACCCTCA AGCGCCCCGA TTTCGAGGTG
CAGACGCGCA AGCTCACCGT GTTCTTCAAG GACAACGTGA TGGAGCGTGT CGAAGGCGAC
GAGATGCCTA CCGAGGCCGA GTTCGTGGCC TCGCTCTCCA CCAAGGTGTC CAAGCCCAAG
GTGCCGCAGC TTGAGGCCAC CGAGGCGCAG CTCGCGCGCT TTCCCAAGGC GGAGCCGGCC
GCCGAGCCGG CCGCCGCGCC CGCTCTGCCA CCCGCCACGA GCTATCCGCC GCTGGAATCT
CCGCGCCGTT GA
 
Protein sequence
MHKPMFAPAR WGARWGAIVL IGAGMAGCAG TGSRLAGMVT PYKVDVVQGN FISREQVQML 
QPGMGRQQVR EILGTPLMVS VFHSDRWEYV FTLKRPDFEV QTRKLTVFFK DNVMERVEGD
EMPTEAEFVA SLSTKVSKPK VPQLEATEAQ LARFPKAEPA AEPAAAPALP PATSYPPLES
PRR