| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3915 |
|---|
| Symbol | holA |
|---|
| ID | 4672901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 4169601 |
|---|
| End bp | 4170647 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639840957 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_988097 |
|---|
| Protein GI | 121596201 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATCG CTTTGAACCA GCTCGGTGCG CAGCTGCACA AAGGCCTGCG CCCGCTCTAC
ACGCTGCACG GCGACGAGGC GCTGTTGCAG CAGGAGGCGC TGGACGCCAT CCGCGCCGCG
GCACGTGCGC AGGGCTATAC CGAGCGCAGC AGCTTCACCG TGGCCGGCGC GCATTTCGAC
TGGAGCGGTG TGCTGGCCGC GGGCGGGTCG TTGAGCCTGT TCGCCGACAA GCAGATCGTG
GAGATCCGCA TCCCCTCGGG CAAGCCCGGC AAGGACGGCG CCGCCGCGCT GCAGCAGATG
GCTGCCGCCG CGCCGGGCAA CGACAGCACG CTCACCGTGG TGGTGCTGCC GCGCCTGGAC
AAGGCCACGC GCACCGGGGC GTGGTTCGCG GCGCTCGAAG CGCACGGCGC CACGGTGCAG
ATCGACCCCG TGGAGCGCGC GCAGCTGCCC GGCTGGATCG CCCAGCGCCT GGCCGCGCAA
GGCCAGCGCG TGGTCGCGGG CGAAGAGGGG CAGCGCACGC TGCAGTTCTT CGCCGACCGG
GTGGAGGGCA ACCTGCTGGC CGCGCACCAG GAGATCCAGA AGCTCGCGCT GCTGCACCCC
GAGGGGGAAC TCACCTGGGC GCAGGTCGAA GCGGCCGTGC TCAACGTGGC GCGCTACGAC
GTTTTCAAGC TGTCCGAGGC GGTGCTCTCC GGCCAGGTGG CGCGCGTGCA GCGCATGCTG
GACGGCCTGC AGGCCGAGGG CGAGGCCGAG GTGCTGGTGC ACTGGGCGCT GGCCGAGGAC
ATCCGCGCCC TCAAGCGCGT GAAAGACGCC ATGAACGCCG GCAAGCCCCT GCCCATGGCC
CTGCGCGAGA ACCGCGTCTG GGGCGCGAAG GAGCGGTTGT TCGAGCGCCT GCTGCCCCAG
GCCAGCGACG CCGCCCTGGC GCGGCTGCTG CAGTCCGCCC ACACGGTGGA CGGCATCGTC
AAGGGCCTGA AGGCGCCCGA CTGGCCACAG GACGGCTGGC AGGCGCTCTC GCGGCTGGCG
CTGCAGATGT GCAAGCTGGC GCGCTGA
|
|---|
| Protein sequence | MQIALNQLGA QLHKGLRPLY TLHGDEALLQ QEALDAIRAA ARAQGYTERS SFTVAGAHFD
WSGVLAAGGS LSLFADKQIV EIRIPSGKPG KDGAAALQQM AAAAPGNDST LTVVVLPRLD
KATRTGAWFA ALEAHGATVQ IDPVERAQLP GWIAQRLAAQ GQRVVAGEEG QRTLQFFADR
VEGNLLAAHQ EIQKLALLHP EGELTWAQVE AAVLNVARYD VFKLSEAVLS GQVARVQRML
DGLQAEGEAE VLVHWALAED IRALKRVKDA MNAGKPLPMA LRENRVWGAK ERLFERLLPQ
ASDAALARLL QSAHTVDGIV KGLKAPDWPQ DGWQALSRLA LQMCKLAR
|
|---|
| |