Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_3908 |
Symbol | |
ID | 4672118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 4160198 |
End bp | 4161406 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639840950 |
Product | benzoate transporter |
Protein accession | YP_988090 |
Protein GI | 121596194 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3135] Uncharacterized protein involved in benzoate metabolism |
TIGRFAM ID | [TIGR00843] benzoate transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00157906 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.79315 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACAAT CCGCCGCCAT GCAGTTTTTC AAAGACCTGA GCCTGTCCGC ATTCACCGCC GGTTTCGTGG CTGTGCTGGT AGGGTTCACC AGTTCGGTCG CCATCGTGTT CCAGGCGGCG CAGGCGTTCG GGGCGACGCC CGAGCAGATC ACCTCCTGGA TGTGGGCGCT GGGCCTGGGC ATGGGACTGT GCTCGCTGAT TCCCTCGCTC ATCCTGCGCC AGCCGGTCAT GGTGGCCTGG TCCACGCCCG GTGCAGCGGT GCTCGCCACC GCCGGCCTGG CCGGCTTCAG CATGGGCGAG GCGGTCGGCG CCTTCATGGT GTGTGCCTTG CTCATCACCC TGGCCGGAGT GACGGGTTGG TTCGAGCGCG TGATGAACCG TATTCCCATG GAACTGGCGT CGGCGCTGCT GGCCGGCGTG CTGGCGCGCT ATGGCATGCA GGCCTTCGCA GCCGTGCAGA CCGCGCTGCC GCTGGTGCTG GTCATGCTGG CGTCCTACTT GTTTGCACGG CGGCTGCTGC CCCGCTATGC GGTTGTGCTC ACGCTGGTGG CAGGCGTTGC CTGGGCCGCA GGCAATGGCC AGATGCGCTG GTCCGCGGTG CACTGGGCGC TGGCCACACC GGTCTTCACC ACGCCGCAGT TCAGCCTACA GGCGCTCATG AGCCTGGCGC TGCCGCTGTT CATCGTGACC ATGGCGTCGC AGAACCTTCC GGGTGTGGCC GTCATGCGGG CCACCGGATA CCAACTGCCG GTGTCGCGGC TGATCACCCT GACGGGCCTG GCCACCCTGG TGCTGGCACC GTTCGGCGCC TTTGCCCTCA ACTTCAGCGC CATCACCGCA GCGATCTGCA TGGGGCCCGA GGCGCACCCC GACCGCGCGC GGCGGTACAC CGCCGCCGCA TCGTGCGGGC TGCTGTACAT CGCAGTGGGC ATCTTTGGTG CGGTGGTCAC GGGGCTGCTG ACGGCGTTTC CACAGGAGCT GGTGGTGGCC ATCGCTGGGC TGGCGCTGTT GGGCGCCATC GGAGGAGGGC TAGCGTCTGC GCTGCAGGCC GAAGCGCATC GGGAGGCGGC GTTGATCACT TTTCTGGTGA CGTTGAGCGG TGTCACCATA GTCGGGATCG GATCGGCGTT TTGGGGGGTG GTCGCCGGCA GCATCGCGCT ATTTGTGCAA CAGTATGGAC GCCCGCGCGC GCCCCAGGCG CCGCGCTAG
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Protein sequence | MPQSAAMQFF KDLSLSAFTA GFVAVLVGFT SSVAIVFQAA QAFGATPEQI TSWMWALGLG MGLCSLIPSL ILRQPVMVAW STPGAAVLAT AGLAGFSMGE AVGAFMVCAL LITLAGVTGW FERVMNRIPM ELASALLAGV LARYGMQAFA AVQTALPLVL VMLASYLFAR RLLPRYAVVL TLVAGVAWAA GNGQMRWSAV HWALATPVFT TPQFSLQALM SLALPLFIVT MASQNLPGVA VMRATGYQLP VSRLITLTGL ATLVLAPFGA FALNFSAITA AICMGPEAHP DRARRYTAAA SCGLLYIAVG IFGAVVTGLL TAFPQELVVA IAGLALLGAI GGGLASALQA EAHREAALIT FLVTLSGVTI VGIGSAFWGV VAGSIALFVQ QYGRPRAPQA PR
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