| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3897 |
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| Symbol | rpoB |
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| ID | 4673222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 4142256 |
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| End bp | 4146380 |
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| Gene Length | 4125 bp |
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| Protein Length | 1374 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639840931 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_988080 |
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| Protein GI | 121596184 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.741595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCAAA CATCCACGTA CAGTTATACC GAACGCAAGC GCATTCGCAA GAGCTTCGGT
AGCCGCGACA GTGTGCTCAA GGTCCCGTAC CTGCTGCAGA TGCAGCGGGA TGCCTATACC
GCGTTCCTGC AGGCCGACAC GGCCCCGCAA AAACGCAGCA ACGAAGGCCT GCAGGCCGCA
TTCAACTCCG CGTTTCCCAT CGTTTCCCAC AACGGCTTCG TGGAGATGAA GTTCGTTGAA
TACAACCTGG CCAAGCCGGC GTTCGACGTG CGCGAATGCC AGACCCGCGG CTTGACTTTT
GCATCGGCCG TGCGTGCCAA GGTGCAGTTG ATCATCTACG ACCGCGAGTC CTCGACCTCG
CAGTCCAAGG TGGTCAAGGA AGTGAAGGAG CAGGAGGTCT ACATGGGCGA AGTGCCCCTG
ATGACCGATA AGGGCTCGTT CATCATCAAC GGCACGGAGC GCGTGATCGT CTCCCAGCTG
CACCGCTCGC CCGGCGTGTT CTTCGAGCAC GACAAGGGCA AGACCCACAG CTCGGGCAAG
TTGCTGTTCT CTGCGCGCAT CATCCCCTAC CGCGGCTCCT GGCTGGACTT CGAATTCGAT
CCGAAGGACA TCCTGTACTT CCGCGTGGAC CGTCGCCGCA AGATGCCGGT CACGATCCTG
CTCAAGGCCA TCGGCCTGAA CCCCGAGTCC ATCCTGGCGA ACTTCTTCGT CAACGACAAC
TTCCGCCTGA TGGACAGCGG TGCTCAGCTG GAGTTCGTGC CCGAGCGCCT GCGTGGCGAG
GTGGCGCGCT TCGACATCAC CGACAAGGCC GGCAAGGTGA TTGTGGCCAA GGACAAGCGC
GTGACGGCGC GCCACACGCG TGAGCTGGAG CAGTCCGGCA CCACGCACAT CAGCGTGCCT
GAGGACTTCC TCATCGGCCG CGTGGTGGCC CGCAACATCG TAGACGGCGA CACCGGCGAG
ATCCTGGCCA AGGCCAACGA AGAGCTGACC GAGGCGTTGC TCAAGAAGCT GCGCGCTGCT
GGCGTGCAGG ACCTGCAGGT CATCTACACC AACGAACTCG ACCAGGGCGC CTACATTTCG
CAGACGCTGC GCATCGACGA AACCGTGGAT GAATTCGCCG CGCGCGTGGC CATCTACCGC
ATGATGCGCC CCGGCGAGCC GCCGACCGAG GATGCCGTGC AGGCCCTGTT CCAGCGCCTG
TTTTACAACC CCGACACGTA CGACCTGTCG CGCGTGGGCC GCATGAAGTT CAACGCCAAG
ATCGGCCGCG ATGAAGCCAC CGGCCCGATG GTGCTGTCCA ACGACGACAT CCTGGCCGTG
GTCAAGATCC TGGTGGACCT GCGCAACGGC AAGGGCGAGG TGGACGACAT TGACCACCTG
GGCAACCGCC GCGTGCGCTG CGTGGGTGAA CTGGCCGAAA ACCAGTACCG CACGGGCCTG
GCACGTATCG AGAAGGCCGT GAAGGAACGC CTGGGCCAGG CCGAGCAAGA GCCGCTGATG
CCCCACGACC TGATCAACTC CAAGCCGATT TCCGCGGCGC TCAAGGAGTT CTTCGGTGCG
TCCCAGCTGT CGCAGTTCAT GGACCAGACC AACCCGCTGG CCGAGATCAC GCACAAGCGC
CGTGTTTCGG CCCTGGGCCC GGGCGGTCTG ACCCGCGAGC GCGCCGGCTT CGAGGTGCGC
GACGTGCACG TGACCCACTA CGGCCGCGTG TGCCCGATCG AGACGCCTGA AGGTCCGAAC
ATCGGTCTGA TCAACTCGCT GGCCCTGTAC GCGCGCCTGA ACGAGTACGG CTTCATCGAG
ACTCCCTACC GCCGCGTGGT GGACGGCAAG GTCACGATGG AAATCGACTA CCTGTCGGCC
ATCGAAGAAG GCAAGTACAT CATCGCCCAG GCCAACGCCA CGCTGGATGC CGAAGGGCGT
CTGACGGGCG ACCTGGTGTC GGCGCGCGAA AAGGGTGAAT CGACCCTGGT GTCCGCCGAC
CGTGTGCAGT ACATGGACGT GTCGCCTGCA CAGATCGTGT CGGTGGCGGC TTCGCTCGTT
CCGTTCCTGG AGCACGACGA CGCGAACCGT GCGCTGATGG GCGCCAATAT GTCGCGCCAG
GCCGTGCCCG TGCTGCGTCC CGAAAAGCCC ATGGTGGGCA CGGGTATCGA GCGCGTGGCG
GCCGTGGACT CCGGCACCGT GGTGACGGCC AACCGTGGCG GTGTGGTGGA CTATGTGGAC
GCCACCCGTA TCGTGGTGCG TGTGAACGAC GACGAAGCCG TGGCCGGTGA AGTCGGCGTG
GACATCTACA ACCTCATCAA GTACCAGCGC TCCAACCAGA ACACGAACAT CCACCAGCGC
CCCATCGTCA AGAAGGGCGA CAAGCTGGCC AAGGGTGACG TGATTGCCGA CGGCGCTTCG
ACCGACCTGG GCGAGATCGC CATCGGCCAG AACATGCTGA TCGCGTTCAT GCCCTGGAAC
GGCTACAACT TCGAGGACTC GATCCTGATC AGCGAGCGCG TGGTGGCCGA AGACCGCTAC
ACCTCGATCC ACATCGAGGA GTTGGTGGTG ATGGCCCGCG ACACGAAGCT GGGCGCGGAA
GAAATCACCC GCGACATCCC GAACCTGTCC GAGCAGCAGC TGAACCGTCT GGACGAGTCC
GGCATCATCT ACGTGGGCGC CGAAGTGCAG CCCGGCGACA CGCTGGTCGG CAAGGTCACG
CCCAAGGGCG AAACCACCCT CACGCCTGAA GAGAAACTGC TGCGCGCCAT CTTCGGCGAG
AAGGCGTCCG ATGTGAAGGA CACCTCGCTG CGCGTGGACC AGGGCTCGCA GGGCACGGTG
ATCGACGTGC AGGTGTTCAC CCGTGAAGGC ATCCAGCGCG ACAAGCGCGC CCAGCAGATC
ATCGACGATG AACTCAAGCG CTTCCGCCTG GACCTGAACG ACCAGTTGCG CATCGTGGAG
GCCGACGCCT TCGACCGTAT CGAGAAGCTG CTGACCGGCC GCGTGGCCAA CGGCGGCCCG
CAAAAGCTGG CCAAGGGTAC GAAGATCGAC AAGGCCTACC TGGCCTCGGT GGAGAAGTTC
CACTGGTTCG ACATCCGCCC CGCCGAGGAA GAGGTCGCCA CGCAGCTGGA GTCCATCAAG
AACGCGCTGG AGCAGACCCG CCACAGCTTC GACCTGGCTT TCGAAGAAAA GCGCAAGAAG
CTCACCCAGG GCGACGAGCT GCCGGCCGGC GTGCTGAAGA TGGTCAAGGT GTACCTGGCC
GTCAAGCGCC GCCTGCAGCC TGGCGACAAG ATGGCCGGCC GCCACGGCAA CAAGGGCGTG
GTGTCCAAGA TCGTTCCGGT CGAAGACATG CCCTACATGG CCGACGGCAC CCCCGCCGAC
ATCGTGCTCA ACCCGCTGGG CGTGCCTTCG CGGATGAACA TCGGCCAGGT GCTGGAAGTC
CATCTGGGCT GGGCCGGCAA GGGCATGGGC CAGCGCATCG GCGACATGCT GCAGCGCGAG
GCCAAGACGG CTGAGCTGCG CAAGTTTCTG GAAGAGATCT ACAACTCGCG CGGCCGCAAG
GAAGACCTGT CGCAGCTGAG CGATGACGAA ATCCTGGCCA TGGCGCGCGA GCTGACCTCG
GGCGTTCCCT TCGCATCGCC CGTGTTCGAC GGCGCGTCCG AAGAGGAAAT CAAGGACATG
CTCAAGTTGG CCTACCCGGA CGACCTCGCC CAGGCCAAGG GCCTGACCGA GACGCGTACG
CAGGCGTACC TGTACGACGG CCGCACGGGC GAGCGTTTCG AGCGCCCGAC GACCGTGGGC
TACATGCACT ACCTGAAGCT GCACCACTTG GTGGACGACA AGATGCACGC CCGCTCGACC
GGTCCGTACT CGCTCGTCAC GCAGCAGCCG CTGGGCGGCA AGGCGCAGTT CGGTGGCCAG
CGCTTCGGTG AGATGGAAGT GTGGGCGCTG GAAGCCTACG GCGCCGCCTA CGTGCTGCAG
GAAATGCTGA CGGTGAAGTC CGACGACGTG CAGGGCCGTA CCAAGGTGTA CGAGAACATC
GTCAAGGGCG AACACGCGAT CGAAGCCGGC ATGCCGGAGT CGTTCAACGT GCTGGTCAAG
GAAATCCGTT CGCTGGGCCT GGACATCGAG TTGGAACGTT CCTGA
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| Protein sequence | MAQTSTYSYT ERKRIRKSFG SRDSVLKVPY LLQMQRDAYT AFLQADTAPQ KRSNEGLQAA
FNSAFPIVSH NGFVEMKFVE YNLAKPAFDV RECQTRGLTF ASAVRAKVQL IIYDRESSTS
QSKVVKEVKE QEVYMGEVPL MTDKGSFIIN GTERVIVSQL HRSPGVFFEH DKGKTHSSGK
LLFSARIIPY RGSWLDFEFD PKDILYFRVD RRRKMPVTIL LKAIGLNPES ILANFFVNDN
FRLMDSGAQL EFVPERLRGE VARFDITDKA GKVIVAKDKR VTARHTRELE QSGTTHISVP
EDFLIGRVVA RNIVDGDTGE ILAKANEELT EALLKKLRAA GVQDLQVIYT NELDQGAYIS
QTLRIDETVD EFAARVAIYR MMRPGEPPTE DAVQALFQRL FYNPDTYDLS RVGRMKFNAK
IGRDEATGPM VLSNDDILAV VKILVDLRNG KGEVDDIDHL GNRRVRCVGE LAENQYRTGL
ARIEKAVKER LGQAEQEPLM PHDLINSKPI SAALKEFFGA SQLSQFMDQT NPLAEITHKR
RVSALGPGGL TRERAGFEVR DVHVTHYGRV CPIETPEGPN IGLINSLALY ARLNEYGFIE
TPYRRVVDGK VTMEIDYLSA IEEGKYIIAQ ANATLDAEGR LTGDLVSARE KGESTLVSAD
RVQYMDVSPA QIVSVAASLV PFLEHDDANR ALMGANMSRQ AVPVLRPEKP MVGTGIERVA
AVDSGTVVTA NRGGVVDYVD ATRIVVRVND DEAVAGEVGV DIYNLIKYQR SNQNTNIHQR
PIVKKGDKLA KGDVIADGAS TDLGEIAIGQ NMLIAFMPWN GYNFEDSILI SERVVAEDRY
TSIHIEELVV MARDTKLGAE EITRDIPNLS EQQLNRLDES GIIYVGAEVQ PGDTLVGKVT
PKGETTLTPE EKLLRAIFGE KASDVKDTSL RVDQGSQGTV IDVQVFTREG IQRDKRAQQI
IDDELKRFRL DLNDQLRIVE ADAFDRIEKL LTGRVANGGP QKLAKGTKID KAYLASVEKF
HWFDIRPAEE EVATQLESIK NALEQTRHSF DLAFEEKRKK LTQGDELPAG VLKMVKVYLA
VKRRLQPGDK MAGRHGNKGV VSKIVPVEDM PYMADGTPAD IVLNPLGVPS RMNIGQVLEV
HLGWAGKGMG QRIGDMLQRE AKTAELRKFL EEIYNSRGRK EDLSQLSDDE ILAMARELTS
GVPFASPVFD GASEEEIKDM LKLAYPDDLA QAKGLTETRT QAYLYDGRTG ERFERPTTVG
YMHYLKLHHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYVLQ
EMLTVKSDDV QGRTKVYENI VKGEHAIEAG MPESFNVLVK EIRSLGLDIE LERS
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