| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3896 |
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| Symbol | |
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| ID | 4673219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 4137896 |
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| End bp | 4142125 |
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| Gene Length | 4230 bp |
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| Protein Length | 1409 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639840930 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_988079 |
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| Protein GI | 121596183 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.78634 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCGC TACTCGACCT GTTCAAGCAA TTCACGCCCG ATGAGCATTT CGATGCCATC
AAGATCGGCA TGGCTTCGCC CGAGAAGATC CGTTCGTGGT CTTTCGGCGA AGTGAAGAAG
CCCGAGACCA TCAACTACCG CACGTTCAAG CCCGAGCGCG ACGGCCTGTT CTGCGCCAAA
ATCTTCGGGC CCATCAAGGA CTACGAATGC CTGTGCGGCA AGTACAAGCG CCTGAAGCAC
CGCGGCGTGA TCTGCGAAAA GTGCGGCGTT GAAGTCACGC AGACCAAGGT GCGCCGCGAG
CGCATGGGCC ATATCGACCT GGCCGCACCC TGCGCCCACA TCTGGTTCCT GAAGTCGCTG
CCTTCGCGCC TGGGCCTGGT GCTGGACATG ACGCTGCGCG ACATCGAACG CGTGCTGTAC
TTCGAAGCCT ACGTGGTCAC CGACCCCGGC ATGACCCCGC TGAAGAAGTT CGGCATCATG
TCCGAGGACG ACTACGACGC CAAGCGCAAG GAATACGGCG ACGAGTTCGT CGCCAAGATG
GGCGCCGAGG GCATCAAGGA GCTGCTGGAA GGCATCGACA TCGAGATCGA GATCGAGAAG
CTGCGCGGCG ACCTGACGGG CTCCGAAGTC AAGGTCAAGA AGAACGCCAA GCGCCTGAAG
GTGCTGGAGG CCTTCAAGAA GTCCGGCATC AAGCCCGAGT GGATGATCCT GGAAGTGCTG
CCCGTGCTGC CGCCGGACCT GCGTCCGCTG GTGCCGCTGG ACGGCGGCCG CTTCGCCACG
TCGGACCTGA ACGACCTGTA CCGCCGCGTC ATCAACCGCA ACTCGCGCCT GCGCCGCCTG
CTGGAACTGA AGGCGCCCGA GATCATCGCG CGCAACGAAA AGCGCATGCT GCAGGAAGCC
GTGGACAGCC TGCTGGACAA CGGCCGCCGC GGCAAGGCGA TGACGGGCGC CAACAAGCGC
GCGCTGAAGT CGCTGGCCGA CATGATCAAG GGCAAGTCGG GTCGCTTCCG CCAGAACCTG
CTGGGCAAGC GCGTGGACTA CTCGGGCCGT TCCGTGATCA CCGTGGGTCC GACGCTCAAG
CTGCACCAGT GCGGCCTGCC CAAGCTGATG GCCCTGGAGC TGTTCAAGCC CTTCATCTTC
TCGCGCCTGG AGGCCATGGG CATTGCCACG ACCATCAAGG CCGCCAAGAA GGAAGTGGAA
GCCGGCACGC CCGTGGTGTG GGACATCCTG GAAGAGGTCA TCAAGGAACA CCCGGTGATG
CTCAACCGTG CGCCCACGCT GCACCGCCTG GGCATCCAGG CGTTCGAGCC GATCCTGATC
GAAGGCAAGG CCATCCAGCT GCACCCGCTG GTCTGCGCCG CGTTCAACGC CGACTTCGAC
GGTGACCAGA TGGCCGTGCA CGTGCCGCTG TCGGTGGAAG CGCAGCTGGA AGCCCGCACG
CTGATGCTGG CGTCCAACAA CGTGCTGTTC CCGGCCTCCG GCGAGCCCTC CATCGTGCCC
TCGCAGGACG TGGTGCTGGG CCTGTACCAC GCCACCCGCG AGAAGATCAA CGGCAAGGGC
GAAGGCCTGG TGTTCGCCGA CACCGGCGAA GTCCAGCGCG CGCTGGATGC GGGCGAGGCC
GAGCTGCACG CCAAGATCAG CGTGCGCCTG ACCGAGTGGA CCAAGGACAA GGCGACGGGT
GAGTTTGTGC CCGAGACCAA GCTCGTGGAC ACCACGGTGG GCCGTGCGCT GCTGTCGGAA
ATCCTGCCCA AGGGCCTGCC CTTCAGCAAC CTGAACAAGG CGCTGAAGAA GAAGGAAATC
TCCAAGCTCA TCAACGCGTC GTTCCGCAAG TGCGGCCTGA AGGACACCGT GGTCTTCGCC
GACAAGCTGC TGCAAAACGG CTTCCGCCTG GCCACGCACG CGGGCTTCTC CGTGGCGATC
GACGACATGC TGGTGCCGCC GCAGAAGGCC GAGATCCTGG CCCGCGCCGA AGCCGAGGTG
AAGGAGATCG AGCAGCAGTA CGTCTCCGGT CTGGTGACGG CCGGCGAGCG CTACAACAAG
GTGGTGGACA TCTGGGGCAA GGCCGGCGAC GACGTGTCCA AGGTGATGAT GGATCAGCTC
AAGGTCCAGA AGACCATCGA CCGCAACGGC AAGGAAGTGA ACGAGGAATC GTTCAACGCC
ATCTACATGA TGGCCGACTC CGGCGCCCGC GGCTCGGCGG CCCAGATCCG TCAGCTGGCC
GGTATGCGCG GCCTGATGGC CAAGCCCGAT GGCTCGATCA TCGAGACGCC TATCACCGCG
AACTTCCGCG AAGGCCTGAA CGTGTTGCAG TACTTCATCT CCACCCACGG TGCCCGTAAG
GGCCTGGCGG ATACGGCGTT GAAGACCGCG AACTCGGGCT ACCTGACCCG TCGCCTGGTG
GACGTGACGC AGGACCTGGT GGTGACCGAG GACGACTGCG GCACCTCGAA TGGTTCGCTG
ATGCGCGCCA TCGTCGAGGG CGGTGAAGTC ATCGAGTCCC TGCGCGACCG TATCCTGGGC
CGTACCGCGG CCGAGGAAGT GCTGCACCCC GAAACGCGTG CCGTGCTGGC GCAGCCGGGC
CGGATGCTCG ATGAAGACCT GATCGAAGAG CTCGAAGCCG CAGGCGTGGA CGAAGTGAAG
GTGCGTACCG CGCTGACCTG CGAAACCCGC TACGGCCTGT GCGCCAAGTG CTACGGCCGC
GACCTGGGCC GCGGCGGCCT GATCAACCTC GGCGAAGCCG TGGGCGTGAT CGCCGCGCAG
TCCATCGGCG AGCCCGGCAC GCAGCTGACC ATGCGTACGT TCCACATCGG TGGTGCGGCA
TCGCGTGCGG CGGTGGCGTC CAGTGTGGAA GCCAAGTCCA ACGGCATCAT CGGCTTCAAC
GCCACGATGC GCTACGTGAC CAACACCAAG GGCGAGCTGG TGGTGATTGC GCGCTCGGGT
GAAATCATCA TCCAGGACGA GCACGGCCGC GAGCGCGAGC GCCACAAGGT GCCGTACGGC
GCGACGCTGA CGGTGAAGGC CGACCAGAAC ATCAAGGCCG GCACCATCCT CGCCAACTGG
GACCCGCTGA CGCGCCCGAT CATCACCGAG TACGCAGGTA CGGTGAAGTT CGAGAACGTC
GAGGAAGGCC TCACGGTGGC CAAGCAGGTG GACGAGGTCA CGGGCCTGTC CACGCTGGTG
GTGATCGACC CCAAGCGCCG CGGCTCTGCC AAGGTGGTGC GTCCGCAGGT GAAGCTGGTG
GACGCCGATG GCAAGGAAGT GAAGATCCCC GGTACCGACC ACTCGGTGAC GATCGGCTTC
CAGGTCGGCG CGCTGATCCA GGTGCGCGAC GGCCAGGAAG TGGGCCCCGG CGAAGTGCTG
GCCCGCATCC CGATGGAAGG CCAGAAGACC CGCGACATTA CCGGCGGTCT GCCGCGCGTG
GCCGAGCTCT TTGAAGCCCG CAGCCCCAAG GACAAGGGCA TGCTGGCCGA GATGACCGGC
ACGATCTCCT TCGGCAAGGA AACCAAGGGC AAGGTGCGCC TGCAGATCAC CGATCCGGAC
GGCAAGGTCT GGGACGAGCT GGTGCCCAAG GAAAAGAACG TGCTGGTCCA CGAAGGCCAG
GTGGTCAACA AGGGCGAGCT GATCGTCGAC GGCCCGGCCG ATCCGCAGGA CATCCTGCGC
CTGCTGGGCA TCGAGGAGCT GTCGCGCTAC ATCGTTGACG AAGTGCAGGA CGTGTACCGC
TTGCAAGGCG TGAAGATCAA CGACAAGCAC ATCGAGGTGA TCGTTCGCCA GATGCTGCGC
CGCGTCGTGG TCGAGAACCC GGGCGAGTCC ACCTACATCG CCGGCGAGCA GGTGGAGCGT
TCCGAGATCC TCAACACCAA CGAGGCGCTG CAGGCCGAAG GCAAGCTCCC TGCCACGTAC
TCCAACGTGC TGCTGGGCAT CACCAAGGCG TCGCTGTCCA CCGACTCGTT CATTTCCGCC
GCGTCGTTCC AGGAAACGAC CCGCGTGCTC ACCGAGGCTG CCATCATGGG CAAGCGCGAC
GAGCTGCGCG GCCTGAAGGA GAACGTGATC GTGGGCCGTC TGATCCCCGC CGGCACGGGC
TTGGCTTACC ACCAGGCGCG CAAGGCCAAG GACGCCATGG ACGAGGCCGA GCGCCGCGCC
ATCGCAGATG CCGAAGCCGC CGAGCTGGCC TCTGCCGGCA CCCACGACGC AGCCGCCGAG
ATCGACGGCA GCGCCGACAC GGCTGATTAA
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| Protein sequence | MKSLLDLFKQ FTPDEHFDAI KIGMASPEKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLAAP CAHIWFLKSL
PSRLGLVLDM TLRDIERVLY FEAYVVTDPG MTPLKKFGIM SEDDYDAKRK EYGDEFVAKM
GAEGIKELLE GIDIEIEIEK LRGDLTGSEV KVKKNAKRLK VLEAFKKSGI KPEWMILEVL
PVLPPDLRPL VPLDGGRFAT SDLNDLYRRV INRNSRLRRL LELKAPEIIA RNEKRMLQEA
VDSLLDNGRR GKAMTGANKR ALKSLADMIK GKSGRFRQNL LGKRVDYSGR SVITVGPTLK
LHQCGLPKLM ALELFKPFIF SRLEAMGIAT TIKAAKKEVE AGTPVVWDIL EEVIKEHPVM
LNRAPTLHRL GIQAFEPILI EGKAIQLHPL VCAAFNADFD GDQMAVHVPL SVEAQLEART
LMLASNNVLF PASGEPSIVP SQDVVLGLYH ATREKINGKG EGLVFADTGE VQRALDAGEA
ELHAKISVRL TEWTKDKATG EFVPETKLVD TTVGRALLSE ILPKGLPFSN LNKALKKKEI
SKLINASFRK CGLKDTVVFA DKLLQNGFRL ATHAGFSVAI DDMLVPPQKA EILARAEAEV
KEIEQQYVSG LVTAGERYNK VVDIWGKAGD DVSKVMMDQL KVQKTIDRNG KEVNEESFNA
IYMMADSGAR GSAAQIRQLA GMRGLMAKPD GSIIETPITA NFREGLNVLQ YFISTHGARK
GLADTALKTA NSGYLTRRLV DVTQDLVVTE DDCGTSNGSL MRAIVEGGEV IESLRDRILG
RTAAEEVLHP ETRAVLAQPG RMLDEDLIEE LEAAGVDEVK VRTALTCETR YGLCAKCYGR
DLGRGGLINL GEAVGVIAAQ SIGEPGTQLT MRTFHIGGAA SRAAVASSVE AKSNGIIGFN
ATMRYVTNTK GELVVIARSG EIIIQDEHGR ERERHKVPYG ATLTVKADQN IKAGTILANW
DPLTRPIITE YAGTVKFENV EEGLTVAKQV DEVTGLSTLV VIDPKRRGSA KVVRPQVKLV
DADGKEVKIP GTDHSVTIGF QVGALIQVRD GQEVGPGEVL ARIPMEGQKT RDITGGLPRV
AELFEARSPK DKGMLAEMTG TISFGKETKG KVRLQITDPD GKVWDELVPK EKNVLVHEGQ
VVNKGELIVD GPADPQDILR LLGIEELSRY IVDEVQDVYR LQGVKINDKH IEVIVRQMLR
RVVVENPGES TYIAGEQVER SEILNTNEAL QAEGKLPATY SNVLLGITKA SLSTDSFISA
ASFQETTRVL TEAAIMGKRD ELRGLKENVI VGRLIPAGTG LAYHQARKAK DAMDEAERRA
IADAEAAELA SAGTHDAAAE IDGSADTAD
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