| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3865 |
|---|
| Symbol | |
|---|
| ID | 4672048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 4106049 |
|---|
| End bp | 4108118 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639840898 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_988048 |
|---|
| Protein GI | 121596152 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.322714 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGTC TCAATCTTGC TCAGTTGCAG GCAGTGCACT ACACCGAGGG CCCGTGCCTG
GTGCTGGCGG GCGCGGGCTC TGGCAAGACG CGGGTTATCA CGCACAAGAT CGCGCGGCTG
ATCGAGACGG GCCTGGCGCC CCGGCGCATT GCCGCCATCA CCTTCACCAA CAAGGCCGCG
GCCGAGATGC GCGAGCGCGC CGCCGGCCTG ATCGGCCGCC AGGCCAAGGA CGTGCTGGTG
TGCACCTTCC ACGCCCTGGG CGTGCGCATG GTGCGCGAGG ACGGCCATGT GCTGGGCCTC
AAGCCCTCGT TCAGCATCCT GGACCAGGAC GACGTGACCG GCATCCTCAA GGACTGCGCG
GGCGGCACCA CCGACCTGGC CACCGCGCGC CAGTGGCAAT GGACCATCAG CAACTGGAAG
AACCAGGGCT GGGATGCGCG CAAGGCGCTG GCCATGGCCC AGGACGACCA TGAGCGCAGC
ATCGCCCTGA TCATGCAGCG CTACGAGGAG CGCCTGACGG CCTACCAGAG CGTGGATTTC
GACGACCTGA TCGGCATGCC CATGCGCCTC TTGCGCCACC ACCCCGAGGT GCGCGAGAAG
TGGCAGCGCC TCTTGGGCCA CGTGCTGGTG GACGAATACC AGGACACCAA CGCCACGCAG
TACGAGCTGC TGAAATACCT GGTGGGCGAG CGCGCGCGCT TCACCGCCGT GGGCGACGAC
GACCAGAGCA TCTACGGCTG GCGCGGCGCC ACGCTGGACA ACCTGAAGAA GCTGCCGCAG
GACTTCCCGC AGCTCAACGT CATCAAGCTG GAGCAGAACT ACCGCTCGAC CAGCGCCATC
CTGCGCGCGG CCAACCACGT CATCCAGCCC AATCCCAAGC TGTTTCCCAA GACGCTGTTC
AGCGAGCTGG GCGAGGGCGA GCCCGTGCGC GTGGTCGATT GCGACAACGA GGAGCACGAG
GCCGAGCGCG CCGTGGCGCG CATCCAGGGC CTGCGGGCAG CCAGCAATCC ACCGCCGGCG
TGGAAGAACT TCGCCATCCT CTACCGCGCC AACCACCAGG CCAAGCCGTT CGAGAAGGCC
CTGCGCAAGG CCAACATCCC CTACAAGGTC TCGGGCGGCA CCAGCTTCTT CGACCGCGCC
GAGATCAAGG ACCTGTGCGC GTGGTTCCGC CTGTGGATCA ACAACGACGA CGACCCGGCC
TTTCTGCGTG CCGTCACCAG CCCGCGGCGC GGCGTGGGCC ACACCACGCT GGCGGCGCTG
GGCGAGTTCG CCACGCAGCA CAAGCAAAGC ATGTTCGGCG CGCTGTTCAA CGCCATGCTG
CCCGCCGTGA TCCCCAAGCG GGGCCTGGAA GGCCTGCTGG AGTTCGGCCG CACCGTCAAC
GACCTGGAGC ACCGCGCACG CCACACGCAC GGCCACGAAG CCGCGCGTGC CTTCCTGGCC
GACTGGCTCA AGGACATGGG CTACGAGCAG CACCTGTACG ACAGCGAGGA CAGCGAAAAG
GTGGCCGCAG CGCGCTGGAG CAACGTGCTG GAGTTCTGCG ACTGGATGGC GCAGCGCGCG
GGCGGCCAGA TCGACGACAC CGCGGGCGCG ACGGTGCAGG CCGCGACCAA GAGCCTGCTG
GAGGTGGCGC AGACCATCGC CCTGCTGTCC ACCATCTCCG AGCGCGAACA GGAGCAGGAC
ATGGTGGTGC TGTCCACGCT GCATGCCAGC AAGGGGCTGG AGTGGCCGCA CGTGATCCTG
GCCGGCGTGA CCGAGGGCAT GCTGCCCTTC AAGCTGGACG ATGACGACGG CCGCCAGCAG
AAGGTGAGTG ACGACACCCT GCAGCGCCTG CAGGAGGAGC GCCGCCTGAT GTACGTGGGC
ATCACCCGCG CCCAGCGCAC GCTGGCCGTG AGCTGGACCA AGAAACGCAA GAAGGGGCGC
GAGATGGTGG CCTGCCAGCC CAGCCGCTTC ATTGCCGAGA TGAAACTGGA CGCCGCCACG
GCGCGCGAGA ACCCACGCGA CAAGTTGCGC CAGTTGCGCG AGGAATTCGC GCGCAAGGCC
CAGGCCGCCC CCAGCCCCGC CACACCCTGA
|
|---|
| Protein sequence | MSGLNLAQLQ AVHYTEGPCL VLAGAGSGKT RVITHKIARL IETGLAPRRI AAITFTNKAA
AEMRERAAGL IGRQAKDVLV CTFHALGVRM VREDGHVLGL KPSFSILDQD DVTGILKDCA
GGTTDLATAR QWQWTISNWK NQGWDARKAL AMAQDDHERS IALIMQRYEE RLTAYQSVDF
DDLIGMPMRL LRHHPEVREK WQRLLGHVLV DEYQDTNATQ YELLKYLVGE RARFTAVGDD
DQSIYGWRGA TLDNLKKLPQ DFPQLNVIKL EQNYRSTSAI LRAANHVIQP NPKLFPKTLF
SELGEGEPVR VVDCDNEEHE AERAVARIQG LRAASNPPPA WKNFAILYRA NHQAKPFEKA
LRKANIPYKV SGGTSFFDRA EIKDLCAWFR LWINNDDDPA FLRAVTSPRR GVGHTTLAAL
GEFATQHKQS MFGALFNAML PAVIPKRGLE GLLEFGRTVN DLEHRARHTH GHEAARAFLA
DWLKDMGYEQ HLYDSEDSEK VAAARWSNVL EFCDWMAQRA GGQIDDTAGA TVQAATKSLL
EVAQTIALLS TISEREQEQD MVVLSTLHAS KGLEWPHVIL AGVTEGMLPF KLDDDDGRQQ
KVSDDTLQRL QEERRLMYVG ITRAQRTLAV SWTKKRKKGR EMVACQPSRF IAEMKLDAAT
ARENPRDKLR QLREEFARKA QAAPSPATP
|
|---|
| |