Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_3861 |
Symbol | hemE |
ID | 4671255 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 4099532 |
End bp | 4100644 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639840894 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_988044 |
Protein GI | 121596148 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.619697 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCTTCG CCCCCCTCCA GAACGACACC TTCCTGCGGG CCTGCCGTCG TCAGGCCACC GACTACACGC CCCTGTGGCT GATGCGCCAG GCGGGCCGCT ACCTGCCCGA ATACAAGGCC ACGCGCGCCA AGGCCGGCAG CTTCATGGGC CTGGCCACGA ACGTGGAGTA CGCCACCGAG GTGACGCTGC AGCCGCTGGA GCGCTTCCCT CTGGACGCGG CCATCCTGTT CAGCGACATC CTCACCGTGC CCGACGCCAT GGGCCTGGGC CTGTCGTTCG CCGAGGGCGA AGGCCCGCGC TTTGCCAAGG CGGTGCGCGA CGAGGCCGAC GTGGCCGCGC TGGCCGTGCC CGACCTGGAC AAGCTGCGCT ATGTGTTCGA CGCCGTCACC AGCATCCGCC GCGCGCTGAA CGGCCGTGTG CCGCTGATCG GTTTCTCGGG CAGCCCCTGG ACGCTGGCCT GCTACATGGT CGAGGGCAAG GGCAGCGACG ATTACCGCCT CGTCAAGACG CTGATGTACA GCCGCCCGGA CCTGATGCAC CGCATCCTGG CGGTGAATGC GGACGCCGTG GCCGCGTACC TGAACGCCCA GATCGACGCC GGCGCCCAGG CCGTGATGGT CTTCGACAGC TGGGGCGGCG TGCTGGCCGA CGGGTGCTTT CAGCAGTTCA GCCTGGAATA CACCCGGCGC GTGCTGGCGC AGCTCAAGCG CACGGGCGTG GACGGGCAGG ATGTGCCGCG CATCGTCTTC ACCAAGGGCG GCGGCATCTG GCTCGACGAC ATGAAGGACA TCGACTGCGA GGTGCTCGGC CTGGACTGGA CGGCCCACCT GGGCAAGGCC CGCGCCATCG TCGGCGGGCA GGTGGGCGGC CCCGGCAAGG CGCTGCAGGG CAACATCGAC CCGAACGTGC TGTTCGCCCC GCCCGAGGCT GTGGCAGCCC AGGTGCGCGC CGTGCTCGAC AGCTTCGGCA CGCCGCACAC TGACAAGACC ACCACCGGCC CCACGCACAT CTTCAACCTG GGCCACGGCA TCAGCCAGTT CACCCCGCCC GAGCACGTGG CCGCGCTGGT GGAAGCCGTG CATGGCTATT CACGCAGCCT GCGGCAGCGG TGA
|
Protein sequence | MSFAPLQNDT FLRACRRQAT DYTPLWLMRQ AGRYLPEYKA TRAKAGSFMG LATNVEYATE VTLQPLERFP LDAAILFSDI LTVPDAMGLG LSFAEGEGPR FAKAVRDEAD VAALAVPDLD KLRYVFDAVT SIRRALNGRV PLIGFSGSPW TLACYMVEGK GSDDYRLVKT LMYSRPDLMH RILAVNADAV AAYLNAQIDA GAQAVMVFDS WGGVLADGCF QQFSLEYTRR VLAQLKRTGV DGQDVPRIVF TKGGGIWLDD MKDIDCEVLG LDWTAHLGKA RAIVGGQVGG PGKALQGNID PNVLFAPPEA VAAQVRAVLD SFGTPHTDKT TTGPTHIFNL GHGISQFTPP EHVAALVEAV HGYSRSLRQR
|
| |