| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3823 |
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| Symbol | |
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| ID | 4670814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 4058393 |
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| End bp | 4059106 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639840856 |
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| Product | FliA/WhiG family RNA polymerase sigma factor |
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| Protein accession | YP_988006 |
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| Protein GI | 121596110 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.374768 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACACCG CGAAAGGCCA GCTCGACCGG GACGCGCTGT TCCACCAGCA CGTGCCCCTG
GTGCGGCGCA TCGCCCACCA CATGATCGCC AAGCTCCCGC CCAACGTGGA GCTGGACGAC
CTGATCCAGG TCGGCATGAT CGGTCTGAAC GACGCGCTCT CGCGCTACGA AGTCGCGCAG
GGCGTGCAGT TCGAGACCTT TGCCAGCCAG CGCATCCGCG GCGCCATGCT CGACGAGCTG
CGCGAGGGCG ACTGGATGAG CCGCAGCTCG CGCAAGAGCC AGAAGGACAT CGAGCATGCC
CTGCACCGCG TGGAGCAGCG CCTGGGCCGC AGCCCCATCG AGTCCGAGAT CGCCGCCGAA
CTGGGCATGA GCCTGGAGGA CTACCAGGCC CTGCTGAGCA AGGTGCGCGG CACGCAGCTG
GTGTACCTGG AAGACTTTCA CCACGATGAC GAGGACGAGG GCTTCCTGGA CCGCCACGTG
GCCGACGAGG GCGCCGATCC CATGGCCGTG CTACGCGACC AGCGCCTGCG CGCCTCGCTG
GTCGAGGCCA TCAAGGCCCT GCCTGAGCGC GAGCAGTACA TCATGGGCAT GTACTACGAG
CACGACATGA ACCTGAAGGA AATCGCCGCC GTCCTGGGCG TGACCGAATC GCGCGTGTGC
CAGCTGCACA GCCAGGCGAT TGCGCGGTTG CGGACGAAGA TGCGGGGGCA CTGA
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| Protein sequence | MYTAKGQLDR DALFHQHVPL VRRIAHHMIA KLPPNVELDD LIQVGMIGLN DALSRYEVAQ
GVQFETFASQ RIRGAMLDEL REGDWMSRSS RKSQKDIEHA LHRVEQRLGR SPIESEIAAE
LGMSLEDYQA LLSKVRGTQL VYLEDFHHDD EDEGFLDRHV ADEGADPMAV LRDQRLRASL
VEAIKALPER EQYIMGMYYE HDMNLKEIAA VLGVTESRVC QLHSQAIARL RTKMRGH
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