| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3747 |
|---|
| Symbol | |
|---|
| ID | 4672244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3969559 |
|---|
| End bp | 3975384 |
|---|
| Gene Length | 5826 bp |
|---|
| Protein Length | 1941 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639840777 |
|---|
| Product | UvrA family protein |
|---|
| Protein accession | YP_987932 |
|---|
| Protein GI | 121596036 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGG GACTGATCCG TATCCACGGC GCGCGCCAGC ACAACCTCAA GAACATCGAC
CTGGACATCC GCACGGGCGA GCTCACCGTG GTCACCGGTC CCAGCGGCTC CGGCAAGTCC
AGCCTGGTGT TCGACACGCT GTATGCCGAG GGCCAGCGCC GCTATGTGGA GACCTTCAGC
GCCTACGCGC GCCAGTTCCT GGACCGCATG GACAAGCCCG CCGTGGACAA GGTGGAGGGC
GTGCCCCCGG CCATCGCCAT CGACCAGACC AACCCCGTGC GCTCGTCGCG CTCCACCGTG
GGCACGATGA CCGAGCTGAA CGACCACCTC AAGCTGCTGT TCGCGCGCGC TGGCCAACTC
TTCGACCGCG AGACGGCGCT GCCCGTGCGC CACGATTCGC CGGACACCAT CCATGCCGAG
TTGCAGCGGC GCTGCGCGGC GGAGGACGAC CCGCGCATCG TGCTCACTTT TCCCGTGGAA
CTGCCCGCGG GCACCACCGC GGAGCAGTTG GAGCAATGGC TGTCGGCCAG CGGCTTCACC
AAGGTGCAGG CCGAGCGCGA GGTGGCCACG CCCACAGGCC CGCGCAAGCT GCTGGACGTG
GTGGCCGACC GCTTTCGTAT GGGCAACGTG GAGCGCGCGC GCGCGGTCGA GGCGATCGAG
GTCGCGCTCA AGCGCGGCGG GGGGCGGCTC AATGTCTATC GCCTGCGGGA CGATGGCGAA
GCAGACCTGT GGCGCTTCTC CACCGGCCTG CATTGCCCCG AGAGCGACCT GCGCTACGCC
GAGCCCATCG CGTCCATGTT CTCGTTCAAC TCCGCCGTGG GCGCCTGCGA CACCTGCCGG
GGCTTCGGCC GCGTGATCGG CGTGGACTAC GGCCTGGTCA TTCCCAACGA CAAGCTCACG
CTGCGCGCCG GTGCGATCAA GACCATCCAG ACCCCCGCCT GGAAAGAAGC GCAGGACGAC
CTCATGCGCC ATGCCGAGGC CGCCGGTATC CCGCGCGACA CGCCCTGGTA CAAGCTCACC
GCGGAGCAAA AGCACTGGGT GATCGAAGGC ACGCCCGGCT TCAAGAACGG CAACTGGAAC
AAGCAGTGGT ACGGCATCCG CCGCTTCTTC GAGTACCTGG AGAGCAAGGC CTACAAGATG
CATATCCGCG TGCTGCTGTC CAAGTACCGC AGCTTCACGC CATGCCCGGT GTGCGCCGGC
GCGCGCCTGA AGACCGAGAG CCTGCTGTGG CGGCTGGGCA GCAAGGAGGA CGCCGATGCC
GTGCTCGACC CCGCGCAGCG CTTCCTGCCG CAGGGCGTGG CCTGGACGCG CGCGCAGCTG
GAGGCGCTGC CCGGCCTGTG CCTGCACGAC CTGATGTTGC TGCCCATCGA CCGCCTGCGG
CGCTTCTTCG CGCGCATGGC GGGTGTGCAG AATGCTCCTG TTTCAATAGC TGGTGGCGCT
CTCCAGGTAA GCGCTACAGG CCAAAACGAC TCTCAGGCTG GCGATCGCCA GGCGCTGCAA
CTGCTGCATG ACGAGATCGC CACGCGCCTC AAGTACCTGT GCGACGTGGG CATCGGCTAC
CTCACGCTGG ACCGGCAAAG CCGCACGCTG TCGGGTGGCG AGGTGCAGCG CATCAACCTG
ACCACGGCGT TGGGCACCTC GCTGGTGAAC ACGCTGTTCG TGCTGGACGA GCCCAGCATC
GGCCTGCACC CGCGCGACAT GCACCGCATC ACCGAGGCCA TGCTGCGCCT GCGCGACGCG
GGCAACACGC TGGTGGTGGT GGAGCACGAC CCCGCCGTGA TGCTCGCGGC CGACCGTGTC
CTCGACTTCG GCCCGGGTCC CGGCGAGCGC GGCGGGCAGA TCGTGTTCGA CGGCACGGTG
GGCGAACTGC GCCGCGCGCC CACGCTGACC GGCCAGTACC TCGGCGGGCA CAAACAGATC
GGCACCGGGC TCAAGCGCCT GGTGACGGAT GCCACGCCGC GCCTGGTGCT GGAGGGTGCG
CGCGAGCACA ACCTGCGCGA TGTGAACGTG GAGTTCCCGC TGCAGCGCCT GGTCACCATC
ACCGGCGTGT CGGGCTCGGG CAAGTCCACG CTGATCCAGG ACGTGCTGGC GCCCGCGCTC
ATGCGCCACT TCGGCAAGGC CACGGAGACG CCCGGCGCGC ATGAGCGCCT GCTGGGCGCC
GACCACCTGA GCGACGTGGT GTTCGTGGAC CAGTCGCCCA TTGGCAAGAC GGCGCGCTCC
AACCCCGTGA GCTATGTGGG TGCGTGGGAT GCCATCCGCG AGCTGTTCGC CGTGGCGCCG
CTGGCCCGGG AGCGCGGCTA CACCGCGGCC AAGTTCAGCT TCAATTCGGG CGACGGGCGC
TGCCCGACCT GCGGCGGCTC GGGTTTCGAG CATGTGGAGA TGCAGTTCCT GTCGGATGTG
TACCTGCGCT GCCCCGACTG CGACGGCAAG CGCTACCGGC CCGAGATCCT GGAGGTGCGC
ATCGAACGCG GTGGCAGGCT GCTCAACGTG GCGGACGCGC TGGACCTCAC CGTGCACGAG
GCAGCAGAGC TGTTTGCGAA AGACCGCGAG GTGATCCGCG CGCTGCAGCC CATCGTGGAC
GTGGGGCTGG AGTACGTGAA GCTGGGCCAG CCCGTGCCCA CGCTGAGCGG TGGCGAGGCG
CAGCGCCTGA AGCTGGCGGG CTTCCTGGCC GAGGCGGCCC GGAGCCAGGC CAAGTCGCGC
CAGCCGCTGG CCCGCAAGGG CACGCTGTTC CTGTTCGACG AGCCCACCAC CGGCCTGCAC
TTCGACGACA TCGCCAAGCT CATGCGCGCG CTGCGCAAGC TGCTGGACGC GGGGCACTCG
CTCATCGTCA TCGAGCACAA CCTGGACGTG ATCCGCGCCA GCGACTGGCT CATCGACCTG
GGGCCCGAAG GCGGCGACGC CGGCGGCCAG GTGGTGGCCG AGGGCGCACC CGAGGAGGTG
CGCCAGCACC CCACGTCGCA CACCGCGCAA GCGCTGCGCG AGTACGAACT GGCGCTGGGC
GAGGGCGGCC ATTCGGTGCA CGAGCAGCAG GCGGTGCTAC GAAAAGAGAA GCTACTCGCG
CTGGATGGAA AAGCGCCAGA GGCCAAAAAC GCCATAGAGA TCGTGAACGC GCGTGAGCAC
AACCTGCGGC ACCTCACGCT GGACATTCCG CGCGGCCGGT TCAACGTGAT CACCGGCGTG
AGCGGCTCGG GCAAGTCCAC GCTGGCGTTC GACATCCTGT TCAACGAAGG CCAGCGCCGC
TACCTGGAGA GCCTGAACGC CTACGCCCGC AGCATCGTGC AGCCGGCCGG GCGGCCCGAG
GTGGACGCGG TGTACGGCAT ACCGCCCACC GTGGCCATCG AGCAGCGCCT GTCGCGCGGC
GGGCGCAAGA GCACCGTGGG CACGACCACC GAGGTGTGGC ACTTCCTGCG TCTGCTGTAT
GTGAAGCTGG GCGTGCAGCA CTGCGTGCAC GACGGCGCGG CGGTGCAGCC GCAGACCAGC
GAGAGCATTG CCGCGCAGCT GCTGCGCGAC TACCGCGGCC AGCACATCGG CCTGCTGGCG
CCGCTGGTCG TGAACCGCAA GGGCGTCTAT ACCGAACTGG CCGACTGGGC GCGCCCGCGT
GGCTACACCC ACCTGCGCGT GGACGGCCAC TTCCTGCCGA CCGCGGGTTT TCCGCGCATC
GACCGCTTCA AGGAGCACAC CATCGAGCTG CCCGTGGCCA GCGTGGACGT GTCGCCGGAG
CATGAAGACA CGCTGCGCAC GCAACTGTCC AAGGCGCTGG AACTGGGCAA GGGCGTGGTG
CATGTGCTGA GCGGCCTGGA CGGCCTGCAG CAGGCGCTGC AGGACGGAGC GCCCACGGCG
CACATCGGGC GGCTGCAGGT GTTTTCCACC AAGCGCGCCT GCCCCGTGTG CGCCACCAGC
TATGCCGAGC TTCAGCCTTC CCTGTTCTCC TACAACAGCA AGCATGGCTG GTGCCCCGAC
TGCGTGGGCA CGGGCGTCAA GCTCACATCG GCGCAGCGCA AGGTGTTGGA CGACTCCGTG
CAGTCGGAGG ACAACCGCGG CCGCGAGCAA ACCTTTGCCG AGCCCGAAGT GGAGGACGTG
GCCGACGCCG CCTGTCCCAC CTGCCAGGGC ACGCGCCTGA ACCCGGTGGC GCGCGCCGTG
CGGTTCGCCG GCACGCCGAT CACCGAGGTG GCGCGCCTGT CGGTGGCCGA AGTGCGGCAG
TGGATCGCCG GGCTGCAGCT GTCGGGGCGC GAGGCGGAGA TTGCGCGCGA CCTGATCCCC
GAGATCCAGA GCCGGCTGGA ATTCCTGGAG GAGGTCGGCC TGTCCTACCT CACGCTGGAC
CGCGGCGCGC CCACGCTCAG CGGCGGCGAG GCGCAGCGCA TCCGCCTGGC GGCGCAGCTG
GGCAGCAACC TGCAGGGCGT GTGCTACGTG CTGGACGAGC CGACCATCGG CCTGCACGCG
CGCGACAACC AGATCCTGCT GAACGCCCTG CACAAGCTCG GCGACAAGGG CAACACCCTG
GTGGTGGTGG AGCACGACGA GGACACCATC CGCCGCGCCG ACCACATCAT CGACATCGGC
CCCAGCGCGG GCAAGCGCGG CGGGCGCCTG GTGGCCCAGG GCACGGTGGC CGACGTGCAG
GCGGCTGCGG ACTCGCAGAC CGGCCGCTAC CTGCTGCACG CCATGCGCCA CCCGCTGCAG
GCGCGTCGTC CGGTAGATGC TATTGAAAAA GTAGCTGATG GCGCCCATCC GGTGGGCTCT
GGAGGCCAAA ACGATGCGGA ACCCCTGCGC TGGCTCACCG TGCACGGCGC GCACCTGCAC
AACCTGCAGC AGGTCACTGC ACGCGTGCCG CTGCAGCGGC TGGTGGCCGT CACGGGCGTA
AGCGGCTCGG GCAAGTCCAC GCTGGCGCGC GACGTGTTGC TGGCCAACGT GGCCGCCTGG
GTGGGCCAGC GCGCCACCAA GGCCGGGCGC GACGCCATGG ATGCGGGCAA GGCGCCGCCG
CTGGCCGGCT GCACCGGCCT GTCGGGCTTC GAGACCATCG ACCGCGTGCT GGAGGTGGAC
CAGACGCCCA TCGGCAAGAC GCCGCGCAGC TGCCCCGCCA CCTACATCGG CTTTTGGGAC
ACCATCCGCA AGCTGTTCGC CGAGACGCTG GAGGCCAAGG CGCGCGGCTA TGCGCCGGGG
CGCTTCAGCT TCAACACCGG CGAGGGGCGC TGCCCGGCCT GCGAAGGGCA GGGCGTGCGC
ACCATCGAGA TGAGCTTCCT GCCCGATGTG AAGGTGCCCT GCGAGGTCTG CCACGGCGCG
CGCTTCAACC CCGAGACGCT GGCCGTCACC TGGCGCGGCA AAAGCATCGG CGACGTGCTG
CAGATGGAAG TGGACGAGGC CGTGGAGTTC TTCGCCAGCA TGCCCGGCAT AGCCCACCCA
CTGCAGCTCT TGAAGGACGT GGGCCTGGGC TACCTCACGC TGGGCCAGCC CAGCCCCACG
CTGAGCGGCG GCGAGGCACA GCGCATCAAG CTGGTGACCG AGCTCACCAA GGTGCGCGAC
GACGTAGGCC GACGCGGGCA GAAAAGCCCG CACACGCTCT ACGTGCTGGA TGAGCCCACC
GTGGGCCTGC ACATGGCCGA CGTGCACAAG CTCATCCAGG TGCTGCACCG GCTGGTCAAC
GGCGGCCACA GCGTGGTCGT GATCGAGCAC GATCTGGACG TGATTGCCGA GGCCGACTGG
ATCATTGACC TGGGCCCCGA AGGCGGCAAG GACGGCGGGC GCATCGTGGC GGCAGCCACG
CCGGAGGACG TGGTGCGCCA GGGCACGCAC ACCGGCAAGG CGCTGGCACC GGTGTTGGCG
CGCTGA
|
|---|
| Protein sequence | MTQGLIRIHG ARQHNLKNID LDIRTGELTV VTGPSGSGKS SLVFDTLYAE GQRRYVETFS
AYARQFLDRM DKPAVDKVEG VPPAIAIDQT NPVRSSRSTV GTMTELNDHL KLLFARAGQL
FDRETALPVR HDSPDTIHAE LQRRCAAEDD PRIVLTFPVE LPAGTTAEQL EQWLSASGFT
KVQAEREVAT PTGPRKLLDV VADRFRMGNV ERARAVEAIE VALKRGGGRL NVYRLRDDGE
ADLWRFSTGL HCPESDLRYA EPIASMFSFN SAVGACDTCR GFGRVIGVDY GLVIPNDKLT
LRAGAIKTIQ TPAWKEAQDD LMRHAEAAGI PRDTPWYKLT AEQKHWVIEG TPGFKNGNWN
KQWYGIRRFF EYLESKAYKM HIRVLLSKYR SFTPCPVCAG ARLKTESLLW RLGSKEDADA
VLDPAQRFLP QGVAWTRAQL EALPGLCLHD LMLLPIDRLR RFFARMAGVQ NAPVSIAGGA
LQVSATGQND SQAGDRQALQ LLHDEIATRL KYLCDVGIGY LTLDRQSRTL SGGEVQRINL
TTALGTSLVN TLFVLDEPSI GLHPRDMHRI TEAMLRLRDA GNTLVVVEHD PAVMLAADRV
LDFGPGPGER GGQIVFDGTV GELRRAPTLT GQYLGGHKQI GTGLKRLVTD ATPRLVLEGA
REHNLRDVNV EFPLQRLVTI TGVSGSGKST LIQDVLAPAL MRHFGKATET PGAHERLLGA
DHLSDVVFVD QSPIGKTARS NPVSYVGAWD AIRELFAVAP LARERGYTAA KFSFNSGDGR
CPTCGGSGFE HVEMQFLSDV YLRCPDCDGK RYRPEILEVR IERGGRLLNV ADALDLTVHE
AAELFAKDRE VIRALQPIVD VGLEYVKLGQ PVPTLSGGEA QRLKLAGFLA EAARSQAKSR
QPLARKGTLF LFDEPTTGLH FDDIAKLMRA LRKLLDAGHS LIVIEHNLDV IRASDWLIDL
GPEGGDAGGQ VVAEGAPEEV RQHPTSHTAQ ALREYELALG EGGHSVHEQQ AVLRKEKLLA
LDGKAPEAKN AIEIVNAREH NLRHLTLDIP RGRFNVITGV SGSGKSTLAF DILFNEGQRR
YLESLNAYAR SIVQPAGRPE VDAVYGIPPT VAIEQRLSRG GRKSTVGTTT EVWHFLRLLY
VKLGVQHCVH DGAAVQPQTS ESIAAQLLRD YRGQHIGLLA PLVVNRKGVY TELADWARPR
GYTHLRVDGH FLPTAGFPRI DRFKEHTIEL PVASVDVSPE HEDTLRTQLS KALELGKGVV
HVLSGLDGLQ QALQDGAPTA HIGRLQVFST KRACPVCATS YAELQPSLFS YNSKHGWCPD
CVGTGVKLTS AQRKVLDDSV QSEDNRGREQ TFAEPEVEDV ADAACPTCQG TRLNPVARAV
RFAGTPITEV ARLSVAEVRQ WIAGLQLSGR EAEIARDLIP EIQSRLEFLE EVGLSYLTLD
RGAPTLSGGE AQRIRLAAQL GSNLQGVCYV LDEPTIGLHA RDNQILLNAL HKLGDKGNTL
VVVEHDEDTI RRADHIIDIG PSAGKRGGRL VAQGTVADVQ AAADSQTGRY LLHAMRHPLQ
ARRPVDAIEK VADGAHPVGS GGQNDAEPLR WLTVHGAHLH NLQQVTARVP LQRLVAVTGV
SGSGKSTLAR DVLLANVAAW VGQRATKAGR DAMDAGKAPP LAGCTGLSGF ETIDRVLEVD
QTPIGKTPRS CPATYIGFWD TIRKLFAETL EAKARGYAPG RFSFNTGEGR CPACEGQGVR
TIEMSFLPDV KVPCEVCHGA RFNPETLAVT WRGKSIGDVL QMEVDEAVEF FASMPGIAHP
LQLLKDVGLG YLTLGQPSPT LSGGEAQRIK LVTELTKVRD DVGRRGQKSP HTLYVLDEPT
VGLHMADVHK LIQVLHRLVN GGHSVVVIEH DLDVIAEADW IIDLGPEGGK DGGRIVAAAT
PEDVVRQGTH TGKALAPVLA R
|
|---|
| |