| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3688 |
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| Symbol | dapF |
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| ID | 4673505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 3904324 |
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| End bp | 3905271 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639840720 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_987875 |
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| Protein GI | 121595979 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.24568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.690927 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGCCG TGCGGGGTTT CCCCGTGGTT GCACCCAGGC GACGCGCGCA TGCGGCGGAT
AATCGCGCCA TGCACATCCG CTTCACCAAG ATGCAGGGCG CGGGCAACGA CTTCGTGGTA
CTCGACGAGA CGCAGGGACG CCTGGGGCTC ACGCCCGCGC AGTACCGCTT TCTGGCCGAC
CGCCACTTCG GCGTGGGCGC CGACCAGATC CTCATCGTGC GCCCCTCGCC CGGCGCGGGT
ATCGACTTCG AATACGTGAT CCACAACGCC GACGGCGGCC AGGTGGAGCA GTGCGGCAAC
GGCGCGCGCT GCTTCGCGCG CTATGTGCGC GACAAGGGCC TCACCGCGCA GGACACGATC
CGCGTTCAGA CCATGGCCGG CGTCATCGCC CCGCACCTGA CCGCCGACGG CCGTGTGACG
GTGGACATGG GCCGCCCCGA ACTGGAGCCG GCGCGCGTGC CGTTCGACAC CACGGGCCTC
GCGCCCGTGT CGCAAGGTTC AGGCCAAAAA TGGCCCCTGG CGCTTGATGG ACAGGCGTCA
GCAGCTACGA TATTAATAGC AGTGGTGTCC ATGGGCAACC CGCACGCCGT CCAGTTGGTC
GACGATGTGG ACACTGCCCC CGTGGCGCAG ACCGGTCCCT TGATCGAAAG CCACCCGCGC
TTTCCCCAGC GCGTGAACGC GGGCTACCTG CAGATCGTGA ACCGTGGTGA AGTGCGCCTG
CGCGTGTACG AGCGCGGCGC GGGCGAGACG CTGGCCTGCG GCACGGGCGC CTGCGCCGCC
GTGGTGGCCG GCATCCGCCT GGGGCTGCTG GATGCGCGCG TGCAGGTGCA CACGCGGGGC
GGCCTGCTCA CCATCGACTG GGCCGGCGGC TTGCAAGACC CCGTGTTCAT GACCGGCCCC
GCTACCACCG TCTTCGAAGG CGAGATCGAC ATTCCGGACG CTTTATGA
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| Protein sequence | MSAVRGFPVV APRRRAHAAD NRAMHIRFTK MQGAGNDFVV LDETQGRLGL TPAQYRFLAD
RHFGVGADQI LIVRPSPGAG IDFEYVIHNA DGGQVEQCGN GARCFARYVR DKGLTAQDTI
RVQTMAGVIA PHLTADGRVT VDMGRPELEP ARVPFDTTGL APVSQGSGQK WPLALDGQAS
AATILIAVVS MGNPHAVQLV DDVDTAPVAQ TGPLIESHPR FPQRVNAGYL QIVNRGEVRL
RVYERGAGET LACGTGACAA VVAGIRLGLL DARVQVHTRG GLLTIDWAGG LQDPVFMTGP
ATTVFEGEID IPDAL
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