| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3654 |
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| Symbol | |
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| ID | 4674283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 3862835 |
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| End bp | 3864922 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639840686 |
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| Product | ribonuclease II |
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| Protein accession | YP_987841 |
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| Protein GI | 121595945 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.55944 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGCAC TGTTCGACGA AGCCGGCAAG TTCCTGGCCG GCCGCATCCT CTCCGAAGCC
GAAAGCTCGG CACAGATTGA GCTCGACTCG GGTAAACGCG TCAAGGTCAA GGACGCCAAC
ATCCTGTTGA AGTTCGACAA GCCCGCCCCG GCCGAGCTGC TGGCGCGGGC GCGCGAGATC
GCCGCCGGCG TGGAGCTTCC GCTGGCCTGG GAGTTCGCGC CCGAGGAGGA GTTCGGCTTC
GCCGAGTTGG CGCGCGACTA TTTTTCTGCC CAGGCGCCAG TGACCGAGCA AGCCGGCATG
CTGGTGGCGC TGTTTGAGGC GCCGCACTAC TTTCGCCGCG CGGGCAAGGG GCGTTTTCGC
AAGGCGTCGG CCGAGGTGCT GCAGCAGGCC CTCGCCGCCA TCGAGAAGAA GAAGCAGATC
CAGGCGCAGA TCGACGCCTG GGCCGCCGAA CTCGTCGCCG GCACCTGCCC GCAGCCTGTG
CGCGAGCAGC TCTACAAAAT TCTGTTCCGC CCCGACAAGA ACGCGCCCGA GTACAAGGCC
GTGGTCGAGG CCAGCCGCAG CGCGCAGAAG GCTCCGCTGG ACCTGTTGCA GGCCGCGGGT
GCGATCGACT CCAGCTACCA GTTCCACTGG AAGCGCTTTT TGTTCGACAA CTTCCCCAAG
GGCACGGGCT TTCCCCAGCT GGCGGCACCC CAGCCGCCGG CCGACCTGCC GCTGGCGGAT
GTACAGGCCT ATTCCATCGA CGATTCGGCC ACCACCGAGA TCGACGACGC CCTGTCGGTG
CAGGGCCTGG GCACCGGCAC CGTGACGCTG GGCATCCACA TTGCAGCGCC GGGCCTGGCG
ATCCAACCCG GGGGCGACCT GGACAAGCTG GGGCGCACGC GCCTGTCCAC CGTCTACATG
CCGGGCTACA AGATCACCAT GCTGCCCGAC GAGGTGGTGC AGATCTACAC GCTGGACGAG
GGGCGCGCCA ACCCGGCCGT GTCGCTGTAT GTGACGATCG ACGAGGCCAC GCTGGCCATC
ACCGCCACCG AGACGCGCCT GGAGCGCGTG CCCGTGACGG TGAACCTGCG CCACGACCAG
CTCGACCACA TCGTCACCGA AGAATGGCTG CAGGATGCGT CGATTCAGAC CGAAAATACG
CCTCAGGCCT TGCTGGATCT GCGTGAGCAG CTCTCCTTTT TGCACCGACT GGCCAAGCAG
CTCAAGGCCC AGCGCGAAGT CGTGCGCGGC AAGCCCGAAA CCTTCAACCG CCCCGACTAC
ACCTTCCGCC TCGCCGGCAA CGACGGCGCC GAGCCCAACG GCAGCGAAAC GGTGGACATC
ACCACCCGCA AGCGCGGCGC GCCGCTGGAC CTGATCGTGG CCGAGGCCGC CATCGTCGCC
AACAGCACCT GGGGCAACAT GCTGGCCGAG CACGGCGTGC CCGGCATCTA CCGCAGCCAG
GCCAGCCTGG CGCCGGGGGT CAAGGTGCGC ATGTCCACCA AGGCGCTGCC GCACGCCGGC
ATCGGCGTGA AGAGCTACGC CTGGGCCACC TCGCCGCTGC GCCGCTACGT GGACCTGGTG
AACCAGTGGC AGATCATTGC CTGCGCGCGC CACGGCAAGA CCGCTGCACT GGCCGCACCG
TTCAAGCCCA AGGACGCGGA GCTGTTCTCC ATCATCAGCA GCTTCGATGC CGCCTACAGC
GCCTACAACG GCTACCAGGC CGGCATGGAG CGCTTCTGGA CGCTCAAGTA CCTGCAGCAG
AACCAGATCA CCGAGCTGGA CGCCACCGTG TTCAAGGAAG GGCCGAACGG CAGCTTCCTG
GTGCGCGCCG ACACCCTGCC ACTGGTGCTG CCCGTGCTGG GCGCGCAGCA GCTGCCGCGC
GGCGCACGCG TGCGCGTCAA GCTCGGCGAG ATCGACGAGA TCACGCTGGA CGTGGCGGGC
ACCCTGGTGG CGCGCCTGGA CGACCCGCTG GATGCCAGCG ACGACGGCCC GGTGGACGAG
GACGAGGGCG ACGAGGAGGC CGTGGCCGGC CCGATCGCCA TCGCGGTCGA TGTCAACGAG
GCCGAGGGCG AGGGCGCCGG CGGCACCGCT GATAATCGGG CGCCGTGA
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| Protein sequence | MHALFDEAGK FLAGRILSEA ESSAQIELDS GKRVKVKDAN ILLKFDKPAP AELLARAREI
AAGVELPLAW EFAPEEEFGF AELARDYFSA QAPVTEQAGM LVALFEAPHY FRRAGKGRFR
KASAEVLQQA LAAIEKKKQI QAQIDAWAAE LVAGTCPQPV REQLYKILFR PDKNAPEYKA
VVEASRSAQK APLDLLQAAG AIDSSYQFHW KRFLFDNFPK GTGFPQLAAP QPPADLPLAD
VQAYSIDDSA TTEIDDALSV QGLGTGTVTL GIHIAAPGLA IQPGGDLDKL GRTRLSTVYM
PGYKITMLPD EVVQIYTLDE GRANPAVSLY VTIDEATLAI TATETRLERV PVTVNLRHDQ
LDHIVTEEWL QDASIQTENT PQALLDLREQ LSFLHRLAKQ LKAQREVVRG KPETFNRPDY
TFRLAGNDGA EPNGSETVDI TTRKRGAPLD LIVAEAAIVA NSTWGNMLAE HGVPGIYRSQ
ASLAPGVKVR MSTKALPHAG IGVKSYAWAT SPLRRYVDLV NQWQIIACAR HGKTAALAAP
FKPKDAELFS IISSFDAAYS AYNGYQAGME RFWTLKYLQQ NQITELDATV FKEGPNGSFL
VRADTLPLVL PVLGAQQLPR GARVRVKLGE IDEITLDVAG TLVARLDDPL DASDDGPVDE
DEGDEEAVAG PIAIAVDVNE AEGEGAGGTA DNRAP
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