Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_3606 |
Symbol | |
ID | 4673627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 3806730 |
End bp | 3809732 |
Gene Length | 3003 bp |
Protein Length | 1000 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639840638 |
Product | HsdR family type I site-specific deoxyribonuclease |
Protein accession | YP_987794 |
Protein GI | 121595898 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTTAACG AATCCAACAC CGTCGAAGCC TATGTCCGTG ATCTGCTCGC CGGTCCCATC AAGGCTGCCC CAGTCAACAC CGCCCAGGAA CCCCAAGCTA GCTACGGGCC CAGCCCCAAA GGCATCGGCT GGCGCTACGC TGCTCCGTCT GAGGTGCCGC GCCAGATTCA GGAAGTGCTG GTTGAACCCT GGCTGCGCGA CGCGCTGATT CGTCTAAACC CGGAGATCGC CGCCCAGCCG GACCGGGCCG ACGAGGTGCT CTACAAGCTG CGTGCCATCG TGCTGTCGGT GCGCTCGGAT GGTCTGATTC GCGCCAACGA GGAAATGACC GCGTGGATGC GCGGTGAGCG CTCGATGCCC TTCGGCCACA ACAACGAGCA TGTGCCGGTG CGGCTGATCG ACCTGGATGA TCTGTCGCAA AACCACTACA TCGTCACCCA GCAATACACC TACCGTGCAG GCCCCACCGA ACGCCGGGCT GATCTGGTGC TGTTGGTGAA TGGCCTGCCG CTGGTACTGA TCGAGGCCAA GACCCCGGTC AAAAAATGCA TCAGCTGGGT CGACGCGGCG GTGCAGGTGC ACGATGACTA CGAGAAGTTC GTGCCTGAGC TCTTCGTCTG CAACGTGTTC TCGGTGGCGA CCGAGGGCAA GGCGTACCGC TATGGCTCCA TCGGGCTACC AGTCAAGGAC TGGGGCCCTT GGCATCTGGA TGGTGATGGC GAGGATAGTC AGCACCATCC GCTGAAGTCG CTCAAGCTGT CGGCCGAGAG CATGCTGCGC CCGCATGTGG TGCTGGACAT CCTCGGCAGT TTCACCCTGT TCGCCACCAA CAAGAAAAAG CAGCGCATCA AGATCATTTG CCGGTACCAG CAGTTTGAAG CGGCCAACAA GATCGTCGAG CGGGTGCTGG CGGGCTACCC CAGGAAGGGC TTGATCTGGC ATTTCCAGGG CTCGGGCAAG TCGCTGCTGA TGGTGTTTGC CGCGCAGAAG CTGCGCATGC ACGCAGGATT GAAGAATCCC ACCGTGCTGA TCGTGGTGGA TCGGATCGAT CTTGATAGCC AGATCACCGG TACCTTCACC GGAGCGGACA TTCCCAACCT GGAAAAGGCG GATACCCGCG AGAAGCTGCA GCAGCTGCTG GCGCAGGACG TGCGCAAGAT CATCATCACC ACGATCTTCA AGTTCGGCGA GGGCCCCAAC TCAACAAAAG GGGGCAGCCT GAACGACCGC AGCAACATCA TCGCCTTGGT GGACGAAGCC CACCGCACGC AAGAAGGCGA CCTGGGCCGC AAGATGCGCG AAGCCCTGCC CAACGCGTTT CTGTTCGGCC TGACCGGCAC GCCGATCAAC CGTGCCGACC GCAACACCTT CTACGCCTTT GGTGCAGACG AGGATGAGAA AGGCTACATG AGCCGGTACG GCTTCGAGGA GTCGATCCGC GACGGTGCCA CGCTAAAACT GCACTTCGAA CCGCGCTTGA TTGATCTGCA CATCGACAAG GCCGCGCTGG ACGCCGCCTA CAAAGACCTG ACCGGCGGCC TGTCGGATCT CGACAAGGAC AACCTCGCTA AAACCGCCGC CAAGATGGCC GTGCTGGTGA AGACGCCTGA GCGCATCCGC AAGGTGTGCG AAGACATCGT CGAGCACTTT CAGGCCAAGG TGGAGCCCAA TGGCTTCAAG GGCCAGATCG TAACGTTCGA TCGCGAGTCC TGCCTGCTGT TCAAGGCCGA GCTGGACAAG CTGCTGCCGC CCGAGGCTAC AGACATCGTG ATGTCGGTGC AGGCGGCGGA CAAAAAAGAA CACCCTGAGT ACGCGCCTTA CGACCGAAGC CGCGATGAAG AAGAGCGACT GCTCGATCGC TTCCGCGACC CGGCCGACCC GCTGAAGCTG ATCATCGTCA CCGCTAAGCT GCTGACCGGC TTCGACGCGC CCATCCTGCA GGCCATGTAC CTGGACAAGC CGCTGCGCGA CCACACGCTG CTCCAGGCCA TCTGCCGGGT GAACCGTACC TACTCCGAGC AGAAGACCCA CGGCCTGATC GTGGACTACC TCGGCATCTT CGATGACGTC GCGGCGGCGC TGGAATTCGA CGACCAGAGC GTCAAGCAGG TGGTCAGCAA CATCCAGGAG TTGAAGGACA AGCTGCCCGA AGCCATGCAG AAGTGCCTGG CCTTCTTCTC TGGCTGCGAT CGCAGTTTGC AAGGCTACGA GGGCCTGATC GCCGCGCAGC AGTGTCTGCC CAATAACGAG GTGCGAGACA ACTTTGCTGC CGAGTACAGC GTGCTCAACA AGATCTGGGA GGCGCTGTCA CCGGACACCG TTCTGGGCCC CTTCGAGAAG GACTACAAGT GGTTGTCGCA GGTGTACCAG TCGGTACAGC CCTCTAGTGG CCACGGCAAG TTGATCTGGC ATTCGCTGGG CGCCAAGACC ATCGAGCTGA TCCACCAGAA CGTGCATGTC GACGCGGTGC GGGATGACCT CGACACCTTG GTGCTGGACG CTGATCTGCT GGAAGCGGTG CTGTCGAACC CAGACCCGAA GAAGGCCAAG GAGATTGAGA TCAAGCTCAA GCGCCGGCTG CGCGGGCATG GCGGCAACCC CAAGTTCAAG AAGCTGTCGG AGCGGCTCGA TGCGCTGAAG GACCGCTTCG AATCCGGGCA GATCAACAGC GTCGAGTTTC TGAAGCAGTT GCTGGAGATC GCCAAGGAGA CGCTGCAGGC CGAGAAGGAC GTGCCGTCCG AAGAGGACGA GGATCGCGGT AAGGCGGCTC TCACCGAGTT GTTCAACGAG GTCAAGACTT CTGAGACGCC CATCATGGTC GAACGCGTGG TCACGGACAT CGACGAGATA GTGCGACTGG TCCGCTTCCC GGGCTGGCAA GGTACGCAGG CCGGCGAGCG TGAAGTCAAG AAGGCCCTGC GCAAAGCCCT CTTCAAATAC AAGCTGCATG CGGATGAAGA GCTGTTCGAG AAGGCCTACA GCTACATCCG GCAGTATTAC TGA
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Protein sequence | MFNESNTVEA YVRDLLAGPI KAAPVNTAQE PQASYGPSPK GIGWRYAAPS EVPRQIQEVL VEPWLRDALI RLNPEIAAQP DRADEVLYKL RAIVLSVRSD GLIRANEEMT AWMRGERSMP FGHNNEHVPV RLIDLDDLSQ NHYIVTQQYT YRAGPTERRA DLVLLVNGLP LVLIEAKTPV KKCISWVDAA VQVHDDYEKF VPELFVCNVF SVATEGKAYR YGSIGLPVKD WGPWHLDGDG EDSQHHPLKS LKLSAESMLR PHVVLDILGS FTLFATNKKK QRIKIICRYQ QFEAANKIVE RVLAGYPRKG LIWHFQGSGK SLLMVFAAQK LRMHAGLKNP TVLIVVDRID LDSQITGTFT GADIPNLEKA DTREKLQQLL AQDVRKIIIT TIFKFGEGPN STKGGSLNDR SNIIALVDEA HRTQEGDLGR KMREALPNAF LFGLTGTPIN RADRNTFYAF GADEDEKGYM SRYGFEESIR DGATLKLHFE PRLIDLHIDK AALDAAYKDL TGGLSDLDKD NLAKTAAKMA VLVKTPERIR KVCEDIVEHF QAKVEPNGFK GQIVTFDRES CLLFKAELDK LLPPEATDIV MSVQAADKKE HPEYAPYDRS RDEEERLLDR FRDPADPLKL IIVTAKLLTG FDAPILQAMY LDKPLRDHTL LQAICRVNRT YSEQKTHGLI VDYLGIFDDV AAALEFDDQS VKQVVSNIQE LKDKLPEAMQ KCLAFFSGCD RSLQGYEGLI AAQQCLPNNE VRDNFAAEYS VLNKIWEALS PDTVLGPFEK DYKWLSQVYQ SVQPSSGHGK LIWHSLGAKT IELIHQNVHV DAVRDDLDTL VLDADLLEAV LSNPDPKKAK EIEIKLKRRL RGHGGNPKFK KLSERLDALK DRFESGQINS VEFLKQLLEI AKETLQAEKD VPSEEDEDRG KAALTELFNE VKTSETPIMV ERVVTDIDEI VRLVRFPGWQ GTQAGEREVK KALRKALFKY KLHADEELFE KAYSYIRQYY
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