| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3580 |
|---|
| Symbol | |
|---|
| ID | 4674459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 3776611 |
|---|
| End bp | 3777555 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639840612 |
|---|
| Product | phosphomethylpyrimidine kinase type-1 |
|---|
| Protein accession | YP_987768 |
|---|
| Protein GI | 121595872 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0582883 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCGA ATACCCCTTC AGCACCCGAC AGCCAAAGCT TGACGGCGGA TGACAGCGAA
TCCACCGCCC CCACCATCTG CGTGATGGTT TTCAATGCAA ACGACCCCAG CGGCGCGGGA
GGATTGGCGG CCGATATTTC GGCGGTGTCC TCGGTCGGGG GGCATGTCGC GCCGGTGGTG
ACCGGGACCT ATGTGCGTGA CAGCGCCGAG ATATTCGACC ATTACGCCTT CGAAGACGAG
ACGGTCGCCG AGCAGGCCCG TGCCGTGCTG GAAGACATGC CGCTGCACGC GATCAAGGTC
GGCTTCGTGG GGAGCCCCGA GAACCTGAGC GCCATCTCCG AGATCGCCGC CGACTATGCG
GACGTGCCCG TCATCGCCTT CATGCCGGAC CTGTCGTGGT GGCAGGACGA CCTGATCGAC
CAGTACCACG ACGCCTTCCG CGAGCTGTTG CTGCCGCAGA CATCGGTATT GGTTGGAAAC
CACAGCACCC TGTGGCGCTG GCTGCTGCCG GACTGGGGCA GTGAGCGCCC ACCCTCGGCA
CGCGACCTGG CCATGGCAGT CGCGGAGATA GGCGTGCCCT ATTTATTGGT GACCGGCATT
CCCGCGGCGG AGCGGCATAT CGACAATGTG CTCGCCTCAC CGCAGACGGT GCTGGGCAGC
GGGCGCTTCG AACGCTTTGA AGTGACTTTC ATCGGAGCGG GCGACACCCT GTCGGCCACC
CTGGCGGCGC TCATTGCCAC CGGCAGCGAC CTGGGCGAGG CCACGAGCGA AGCGCTCACT
TACCTGGACG GCTGCCTGCA GCACGGATTC CGCCCCGGCA TGGGCCATGT GCTGCCCGAC
CGCATGTTCT GGGCCCAGCC CGACGATGAG GACACCGACG ACGACGTATC TCCCTCCGCG
GTCGTGGAGG GCTTCGATTT GCCACCCCAT GACACACAAC ACTGA
|
|---|
| Protein sequence | MQSNTPSAPD SQSLTADDSE STAPTICVMV FNANDPSGAG GLAADISAVS SVGGHVAPVV
TGTYVRDSAE IFDHYAFEDE TVAEQARAVL EDMPLHAIKV GFVGSPENLS AISEIAADYA
DVPVIAFMPD LSWWQDDLID QYHDAFRELL LPQTSVLVGN HSTLWRWLLP DWGSERPPSA
RDLAMAVAEI GVPYLLVTGI PAAERHIDNV LASPQTVLGS GRFERFEVTF IGAGDTLSAT
LAALIATGSD LGEATSEALT YLDGCLQHGF RPGMGHVLPD RMFWAQPDDE DTDDDVSPSA
VVEGFDLPPH DTQH
|
|---|
| |