| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3551 |
|---|
| Symbol | |
|---|
| ID | 4671592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 3741447 |
|---|
| End bp | 3742250 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639840583 |
|---|
| Product | IclR family transcriptional regulator |
|---|
| Protein accession | YP_987740 |
|---|
| Protein GI | 121595844 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.780381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGACA CTCCCCTTTC CGTAAGTAAT ACCCACAAGC CGGGGGATAG CTACGTGCAG
TCGTTTGCAC GCGGGCTGGA GGTGATCCGC TCCTTCAGCG CGGCGGCGCC GCAGCAGACC
CTGAGCGAAG TCGCGGCACG CACCGGCCTG ACGCGCGCAG GCGCGCGCCG CATCTTGCTG
ACGCTGCAGA CGCTCGGGTA TCTGGAGAGC GATGGCCGGC TGTTCCGCCT CACGCCGCGC
ATCCTGGACC TGGGCTTTGC CTACCTGAGT TCCATGCCCA TCTGGGACCT GGCCGAGCCG
CTGATGGAGG CCCTTACCGA CCGCGTGCAT GAGTCCTGCT CCGCCGCCGT GCTGGACGGG
CTGGACATCG TCTATGTGCT GCGCGTGCAC ACCCACAAGA TCATGAGCAC CAACCTGGCC
GTGGGCTCAC GACTGCCGGC CTTCTGGACG TCGCTGGGCC GCGTGCTGCT GGCCGAGCTG
CCCGAGCAGG AACTGCGCGC CCGGCTGTCC GCGCTGCCGC GCCAGCAGTT CACGCGCCAC
ACGGTGCTGG ACGATGCGAC GCTGCTCGCG CGCATCGCCC AGGCACGCGC CCAAGGCTGG
TGCCTGGTGG ATCAGGAACT GGAAGAGGGT TTGATTTCGG TGGCAGCGCC ACTCAAGAAC
CGGGCGGGCC AGGTGGTGGC GGCCCTGAAC ATCAGCGGCC AGGCCAACCG CACCAGCACC
GAAATGCTGC GCGAGCAGTT GCTGCCCGAG TTGCTGGCCA CGGCCCAGAC CATCTCGCGC
ATGCTGGGCA CGCGCCGGCC CTGA
|
|---|
| Protein sequence | MDDTPLSVSN THKPGDSYVQ SFARGLEVIR SFSAAAPQQT LSEVAARTGL TRAGARRILL
TLQTLGYLES DGRLFRLTPR ILDLGFAYLS SMPIWDLAEP LMEALTDRVH ESCSAAVLDG
LDIVYVLRVH THKIMSTNLA VGSRLPAFWT SLGRVLLAEL PEQELRARLS ALPRQQFTRH
TVLDDATLLA RIAQARAQGW CLVDQELEEG LISVAAPLKN RAGQVVAALN ISGQANRTST
EMLREQLLPE LLATAQTISR MLGTRRP
|
|---|
| |