Gene Ajs_3548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_3548 
Symbol 
ID4671226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp3738668 
End bp3739879 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content71% 
IMG OID639840580 
Productbeta-ketoadipyl CoA thiolase 
Protein accessionYP_987737 
Protein GI121595841 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID[TIGR01930] acetyl-CoA acetyltransferases
[TIGR02430] beta-ketoadipyl CoA thiolase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.608439 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACG CCCGCCACGC CTTCATCTGC GACGCGATCC GCACCCCCTT CGGCCGCTAC 
GGCGGCGCCC TCTCCAGCGT GCGCACCGAC GACCTGGGCG CGTTGCCCAT CAAGGCGCTG
ATGGAGCGCA ACCCCGGCGT GGACTGGGCC GCGGTGGATG ACGTGCTGTA TGGCAACGCC
AACCAGGCCG GCGAGGACAA CCGCAACGTG GCGCGCATGT CCAGCCTGCT GGCCGGCCTG
CCCATCGACG TGCCCGGCGC CACCATCAAC CGCCTGTGCG GCTCGGGCCT GGACGCCGTG
GGCTCCGCCG CGCGCGCCAT CAAGTCGGGC GAGGCGCGCT TGATGATCGC CGGCGGCGTC
GAGTCCATGA GCCGCGCGCC CTTCGTGATG CCCAAGGCGG AAAGCGCCTT CAGCCGCAGC
AACGCGGTGT ACGACACCAC CATCGGCTGG CGCTTCATCA ACAAGCTGAT GAAGGCTCAA
TACGGCGTGG ACTCCATGCC CGAGACGGCC GAGAACGTGG CCGACGATTT CAAGATCGAG
CGCGAGGCCC AGGACCGCAT GGCACTGGCC AGCCAACAGA AGGCGGCCGC CGCGATGGCC
GCCGGCTACC TGGCCAAGGA AATCGTCAAC GTCGTCATTC CCCAGAAGAA GGGCGACGCC
GTCGTGGTCA GCCAGGACGA GCATCCGCGC GCCACCACGC TGGAGGCGCT GGCCAAGCTC
AAGGGCGTGG TGCGCGAGGG CGGCACCGTC ACGGCCGGCA ACGCCAGCGG CGTGAACGAC
GGCGCCTGCG CGCTGCTGCT GGCCGATGAG GCGGCCGCCC AGCAATACAA CCTGGTGCCC
CGCGCCCGCG TGGTGGGCAT GGCCGTGGCC GGCGTGGCGC CGCGCATCAT GGGCTTTGGC
CCCGCGCCTG CCGTGCGCAA GGTGCTGGCC CAGACCGGCC TGACGCTGGA CCAGATGGAC
GTGATCGAGC TGAACGAAGC TTTCGCCGCA CAGGGCCTGG CCGTGCTGCG CGACCTGGGT
GTTGCCGATG ACGACAAGCG CGTCAACCAG TGGGGCGGCG CCATCGCCCT GGGCCACCCG
CTGGGGGCCT CGGGCGCGCG CCTGGCCACC ACCGCCGTGA ACCAGCTGCA CACGCTGGGC
GGCCGCTACG CACTGTGCAC CATGTGCATC GGCGTGGGCC AGGGCATCGC CGTGGTGCTG
GAGCGCGTGT AA
 
Protein sequence
MSNARHAFIC DAIRTPFGRY GGALSSVRTD DLGALPIKAL MERNPGVDWA AVDDVLYGNA 
NQAGEDNRNV ARMSSLLAGL PIDVPGATIN RLCGSGLDAV GSAARAIKSG EARLMIAGGV
ESMSRAPFVM PKAESAFSRS NAVYDTTIGW RFINKLMKAQ YGVDSMPETA ENVADDFKIE
REAQDRMALA SQQKAAAAMA AGYLAKEIVN VVIPQKKGDA VVVSQDEHPR ATTLEALAKL
KGVVREGGTV TAGNASGVND GACALLLADE AAAQQYNLVP RARVVGMAVA GVAPRIMGFG
PAPAVRKVLA QTGLTLDQMD VIELNEAFAA QGLAVLRDLG VADDDKRVNQ WGGAIALGHP
LGASGARLAT TAVNQLHTLG GRYALCTMCI GVGQGIAVVL ERV