Gene Ajs_3480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_3480 
Symbol 
ID4674209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp3675295 
End bp3676416 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content71% 
IMG OID639840513 
ProducttRNA 2-selenouridine synthase 
Protein accessionYP_987670 
Protein GI121595774 
COG category[R] General function prediction only 
COG ID[COG2603] Predicted ATPase 
TIGRFAM ID[TIGR03167] tRNA 2-selenouridine synthase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.54526 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTGCCGCG GGCGCGCCGC GCGCATCATC CCAGATTCGC ACCTGCCCGG CTTTGTTCAG 
CACTGCATTC CCGTGTCCCA CCACCGCCCC ACCCGTCCCG AAGACCGCCA CCAGTTCGAC
GCCCTCATCG ACGCGCGCTC GCCCGCCGAA TACGCCGAGG ACCACATCCC CGGCGCGATC
AACTGCCCGG TGCTGAACGA CGAGGAGCGC GCCATCGTCG GCACCATCTA CGTGCAGCAA
AGCGCCTTCG AGGCGCGCCG CGTGGGCGGA GCCATGGTGG CGGCCAACCT GGCGCACCAC
CTGCGCACGC ATTTCGCCGA CAAGCCAGCG CACTGGCGCC CGCTGGTCTA CTGCTGGCGC
GGCGGCATGC GCAGCGGCTC CATGGTGCAG TGGATGCGCC TGGTGGGCTG GGACGCACAG
CAGCTCGCCG GCGGCTACAA GTCCTTTCGC CGCCATGTGA TGACGCAGAT CGAGACGCTG
GTGCCGCAGC TGGAGCTGCG CGTGCTGGTG GGCGCCACCG GCAGTGCCAA GACGCGCGTA
CTGCAGCAGT TGGCCGGCAT GGGCGCGCAG GTGCTGGACC TGGAGCACTG CGCCCGCCAC
AAGGGCTCGC TGCTCGGCGC GCTGCCGGGC GTGCCGCAGC CGTCGCAAAA GAATTTCGAG
ACACAGATCG CCACCGCGCT GGAGGCGCTG GATCTGTCGC GCCCCGTGTA TGTGGAGGGC
GAGAGCGCGC GCATCGGCCG CCTGTCGGTA CCCGTGCCGC TGGTGCAACG CCTGCGCGCC
GCCGCGTGCA TCGAGATCGA AGCCACGCCC GAAGAGCGCC TGACCTACCT GCTGCGCGAC
TACGCTTACC TGGGCGACGA CCCTGACGCC CTGGCCAAGC GCCTGGGCAC GCTCACCGAG
CTGCAGGGCA AGGAAGTCGT GCAGCGCTGG CAGGCCTGGG CCCGGGCGGG GGAGCTGTCC
GCGCTGTTCG CCGAGCTGAT GCTGCTGCAC TACGACCCGC ACTACGGCCG CTCGCAGGCA
CGCAACTTTG CGCGGTGGGA GCAGCGCCAG CGCGTAGGCG CGCCGGACCT GTCGCCCGAG
GGCATCGCCG GCGTGGCGCA GGCCGTGCTG GCGCTGGGAT AG
 
Protein sequence
MCRGRAARII PDSHLPGFVQ HCIPVSHHRP TRPEDRHQFD ALIDARSPAE YAEDHIPGAI 
NCPVLNDEER AIVGTIYVQQ SAFEARRVGG AMVAANLAHH LRTHFADKPA HWRPLVYCWR
GGMRSGSMVQ WMRLVGWDAQ QLAGGYKSFR RHVMTQIETL VPQLELRVLV GATGSAKTRV
LQQLAGMGAQ VLDLEHCARH KGSLLGALPG VPQPSQKNFE TQIATALEAL DLSRPVYVEG
ESARIGRLSV PVPLVQRLRA AACIEIEATP EERLTYLLRD YAYLGDDPDA LAKRLGTLTE
LQGKEVVQRW QAWARAGELS ALFAELMLLH YDPHYGRSQA RNFARWEQRQ RVGAPDLSPE
GIAGVAQAVL ALG