Gene Ajs_3340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_3340 
Symbol 
ID4671826 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp3532196 
End bp3533554 
Gene Length1359 bp 
Protein Length452 aa 
Translation table11 
GC content64% 
IMG OID639840380 
Productphage integrase family protein 
Protein accessionYP_987538 
Protein GI121595642 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.58116 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0453376 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCGCC CAAAAAAGAC AGACACGCCA GACATTGCCG AGCGCATCAA CCTGACTGCT 
GGCGCAATCG ACCGCCTGGC CTGCCCCGCT GGCAAGCAAC AGGCATTCAT GCGAGACAGC
GAAGCGCCCG GCCTGCGTGT ACGTGTAACC GCTGCTGGTG CGAAGTCTTT TGTCTATGAG
GCCAAGCTAG ACCGGCAAAC CATCCGCCGC ACCATTGGGG ACGTGAAGCT GTGGAGCATT
GAACAGGCCC GCACCGAAGC CCGCCGCCTT GCCGTGGTGC TGGATAACGG GCAAGACCCC
CGAGAGATAG AGCGCCAGCA ACAGGCAGAC AAGGCCGCAG CCAAGGCGAC CGCAGCCGTC
CAAGCCGTTA CCGTGGGTGA GGTGTGGGCC CTGTACCTTG AGGCCCGCCG CCCGCACTGG
GGAGCGCGGC ACCATGCCGA CCATGTGAAG CTGGTTCAAG TCGGGGGCGA GGTTTCCAAG
CGTGGCACCC GTGGCCGTGG CGTGACTGTG GCCGGGCCGT TGCATCCGCT GATGGGGCTT
GCGCTGCGTG ACCTGACAGC GCCCGTTATC GAGGCATGGG CCGCACGCGA GGCACAGACC
CGCCCAACAT CCGCCCGGCT GGCATGGCGC TGCCTGAAAG CCTTTTTGAG CTGGTGCGCA
GAACAGTCGG AATATGCGCC AGCGATGCCC AGCGTGAACC CTGCCAAGAC CAAGAAGGCC
CGCGAGGCAT TGGGCAAGGC CGGTGTGAAG CAGGATGCAC TGCTGAAAGA GCAGCTACCC
GCGTGGTTTA CCGCCGTGCA ACAGATTCAA AACCCCATTG CAGCCGCCTA CTTGCAAGTG
CTGGTGCTGA CTGGTGCAAG GCCGGGCGAG GTGCTGGGGC TGCGCTGGGA GGATGTCAAC
ACCAAGTGGA AAGGGTTGAC CATCCGGGAC AAGGTGGAAG GCGAGCGCGT GATACCCCTG
ACGCCCTATG TGTCGCACCT GCTGCACTCG CTGCCGCGCC GCAGTGACTG GGTGTTTCCC
AGCACCGCAC GGGGCAAGGA CACCGAAGGG CAGACCCTGA GCATCCCGAG AGCCCCGCAT
ACTGCTGCGT GCGCCGTGGC TGGTATCGAG GGGCTTACCT TGCATGGGCT GCGCAGGTCA
TTCAAGAGCC TGACGGAGTG GCTCGAAATT CCCGCCGGTG TGGTGGCTCA AATCATGGGC
CACAAGCCCA GCGCAACCGC TGAAAAGCAC TACACCGTGC GCCCGCTCGA CCTGCTGCGC
GTACACCATG AGCGCATAGA GGCGTGGATT TTGGAACAGG CCGGGATTGT GTTTGATGCC
AAGGCCGCGC CCGGTGCGCT GCGTGTGGTG GCCGTCTGA
 
Protein sequence
MARPKKTDTP DIAERINLTA GAIDRLACPA GKQQAFMRDS EAPGLRVRVT AAGAKSFVYE 
AKLDRQTIRR TIGDVKLWSI EQARTEARRL AVVLDNGQDP REIERQQQAD KAAAKATAAV
QAVTVGEVWA LYLEARRPHW GARHHADHVK LVQVGGEVSK RGTRGRGVTV AGPLHPLMGL
ALRDLTAPVI EAWAAREAQT RPTSARLAWR CLKAFLSWCA EQSEYAPAMP SVNPAKTKKA
REALGKAGVK QDALLKEQLP AWFTAVQQIQ NPIAAAYLQV LVLTGARPGE VLGLRWEDVN
TKWKGLTIRD KVEGERVIPL TPYVSHLLHS LPRRSDWVFP STARGKDTEG QTLSIPRAPH
TAACAVAGIE GLTLHGLRRS FKSLTEWLEI PAGVVAQIMG HKPSATAEKH YTVRPLDLLR
VHHERIEAWI LEQAGIVFDA KAAPGALRVV AV