| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3324 |
|---|
| Symbol | |
|---|
| ID | 4670774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3519378 |
|---|
| End bp | 3521828 |
|---|
| Gene Length | 2451 bp |
|---|
| Protein Length | 816 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639840363 |
|---|
| Product | ATP-dependent DNA helicase UvrD |
|---|
| Protein accession | YP_987522 |
|---|
| Protein GI | 121595626 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0235629 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCCAC ACGACCTGTT TTCCGGCGCG CCAGCGCCTT TTGGCACTGG CAATGGTGCC
GGCGCTACCG GGGTTTCGTC CCAGGCGGTG CAGCCGCTGC TGCAAAACCT CAACCCCGAG
CAACTGGCCG CCGTGACGCT GCCTGCCGGC CATGCGCTCA TCCTGGCGGG CGCCGGCTCC
GGCAAGACCC GGGTGCTCAC CACGCGCATT GCCTGGCTGC TGCAGAACGG TCTGGCCACT
CCGGGCGGCA TCCTGGCCGT GACCTTCACC AACAAGGCGG CCAAGGAGAT GCTGACGCGC
CTCTCAGCCA TGCTGCCCAT CAACGTGCGG GGCATGTGGA TCGGCACATT CCACGGCCTG
TGCAACCGCC TGCTGCGCGC GCACCACAAG CTGGCAGGCC TGCCGCAAGC CTTCCAGATC
CTGGACACGC AGGACCAGCT CTCGGCCATC AAGCGGCTGT GCAAGCAGTT CAACGTGGAC
GAGGAGCGCT TCCCACCCAA GCAGCTGGCC TACTTCATCG CTGGCTGCAA GGAAGAGGGC
ATGCGCCCGC GCGACGTGCC GGCGCACGAT GCCGACACGC GCAAGAAGGT GGAGCTGTAC
CAGTTGTACG AGGAGCAGTG CCAGCGCGAG GGCGTGGTGG ACTTTGGCGA GCTGATGCTG
CGCAGCTTTG AGCTGCTGCG CGACAACGAC CCCGTGCGGG CGCATTACCA GCGGCGCTTT
GCGCACATTT TGGTGGACGA GTTCCAGGAC ACCAACAAGC TGCAATACGC CTGGCTCAAG
CAGATGGCGG GCGACGTGGT GGACGGACGC CTGCACACGC AGGGCAGCGT GCTGGCCGTG
GGTGACGACG ACCAGAGCAT CTACGCCTTT CGCGGGGCAC GCGTGGGCAA CATGCAGGAC
TTCGTGCGCG AGTTCGACGT GCAGCACCAG ATCAAGCTGG AGCAGAACTA CCGCAGCTAC
AGCAACATCC TGGACTCGGC CAACGCGCTG ATCAGCCACA ACAGCCGGCG CTTGGGAAAA
AACCTGCGCA CCACGCAGGG CCCGGGCGAG CCCGTGCGCA TCTACGAGGC CAACAGCGAC
CTGGCCGAGG CGCAGTGGAT GGTCGATGAG ATCAAGCAGC TCGTGCGGGA CGGCGAGATG
CCGCGCAAGG AGATCGCTGT GCTCTACCGC AGCAATGCGC AGAGCCGGGT GATCGAATCG
GCCCTGTTCA ACGCCAGCGT GCCCTACCGC GTGTACGGCG GGCTGCGCTT TTTCGAGCGC
GCCGAGATCA AGCACGCGCT GGCCTACCTG CGCCTGCTGG AGAACCCGCA CGACGACACC
AGCTTTCTGC GCGTGGTGAA CTTCCCGCCG CGCGGCATTG GTGCGCGCAC GCTGGAGGTG
CTGCAGGATG CGGCGCGCAG CAGTGGCTGC TCGCTGCACG ACGCGGTGAG TGCGGTGCCT
GGCAAGGCCG GCACCAACCT GGGTGCCTTC GTGGCCCTGG TTCAAGTGCT GCGCGAGCAG
ACGCAGGGCC AGAACCTGCG CGGCATCATC GGCCAGGTGC TCGAATCCAG CGGCCTGCTG
GAGCATTACC GCCACGAAAA GGAAGGCGCG GACCGGCTGG AGAACCTGGA CGAGCTCATC
AACGCGGCCG AGAGCTTCGT CACCCAGGAG GGCTTTGGCC GCGATGCGGT CGCGCTGCCG
CTGGACGAGC ACGGCAACGC CCTCACGCAA AGCCCGGCCA GCCAGGGGCT GGACCCCGAC
GCGCCGATGC TGAATGCCCC TGGCAACGTG GATGCCGACA CCGGCGAAAC GCTGTCGCCG
CTGGCGGCCT TCCTGACCCA CGCCGCATTG GAGGCGGGGG ACAACCAGGC CCAGGCGGGG
CAGGATGCGG TGCAGCTCAT GACCGTGCAT GCCAGCAAGG GGTTGGAGTT CGACTGCGTG
TTCATCGGCG GCATGGAGGA AGGGCTGTTC CCGCATGAGA ACTCCATGAG CGACCGCGAC
GGCCTGGAGG AAGAACGCCG CCTGATGTAC GTGGCCATCA CCCGCGCGCG CAAGCGTCTG
TACCTGAGCC ATTCGCAGAC GCGCATGCTG CACGGGCAGA CGCGCTACAA CGTCAAGAGC
CGCTTCTTTG ATGAGCTACC CGAGGAGGCG CTCAAATGGA TCATGCCGCG CCAGGCAGGG
TTTGGATCTT TCGCTCCTGA TTTAGGAGCT GCTCGCGCTT ACCAGTCGGG CGCTAGAGGC
CAATTTGGCT TCAAGACCGA AGTATTCGCC AGTCCCCCCG TACCCCCGGT CAAGGCGGCG
CCGGGCCATG GCCTGCGCGT GGGGCTGGCG GTGTTCCACA CCAAGTTCGG CGAGGGCAAG
GTGCTGGCCA TCGAGGGCGC GGACGCCGAC GCGCGGGCGC AGGTGCACTT TCCGCGCCAC
GGCACCAAGT GGCTGGCGCT GTCGGTGGCC AAGCTCACCA TCGTCGAATA A
|
|---|
| Protein sequence | MLPHDLFSGA PAPFGTGNGA GATGVSSQAV QPLLQNLNPE QLAAVTLPAG HALILAGAGS
GKTRVLTTRI AWLLQNGLAT PGGILAVTFT NKAAKEMLTR LSAMLPINVR GMWIGTFHGL
CNRLLRAHHK LAGLPQAFQI LDTQDQLSAI KRLCKQFNVD EERFPPKQLA YFIAGCKEEG
MRPRDVPAHD ADTRKKVELY QLYEEQCQRE GVVDFGELML RSFELLRDND PVRAHYQRRF
AHILVDEFQD TNKLQYAWLK QMAGDVVDGR LHTQGSVLAV GDDDQSIYAF RGARVGNMQD
FVREFDVQHQ IKLEQNYRSY SNILDSANAL ISHNSRRLGK NLRTTQGPGE PVRIYEANSD
LAEAQWMVDE IKQLVRDGEM PRKEIAVLYR SNAQSRVIES ALFNASVPYR VYGGLRFFER
AEIKHALAYL RLLENPHDDT SFLRVVNFPP RGIGARTLEV LQDAARSSGC SLHDAVSAVP
GKAGTNLGAF VALVQVLREQ TQGQNLRGII GQVLESSGLL EHYRHEKEGA DRLENLDELI
NAAESFVTQE GFGRDAVALP LDEHGNALTQ SPASQGLDPD APMLNAPGNV DADTGETLSP
LAAFLTHAAL EAGDNQAQAG QDAVQLMTVH ASKGLEFDCV FIGGMEEGLF PHENSMSDRD
GLEEERRLMY VAITRARKRL YLSHSQTRML HGQTRYNVKS RFFDELPEEA LKWIMPRQAG
FGSFAPDLGA ARAYQSGARG QFGFKTEVFA SPPVPPVKAA PGHGLRVGLA VFHTKFGEGK
VLAIEGADAD ARAQVHFPRH GTKWLALSVA KLTIVE
|
|---|
| |