Gene Ajs_3278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_3278 
Symbol 
ID4674093 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp3462655 
End bp3463395 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content63% 
IMG OID639840318 
Product3-oxoacyl-[acyl-carrier-protein] reductase 
Protein accessionYP_987477 
Protein GI121595581 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.752219 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAT CCGCCTCTCC CCAGATTGCG CTGGTTACCG GCGCCACCCG CGGCATCGGA 
GCCGCCATTG CCGCCGAGCT CGCCCAGCGG GGCTTGCGCG TGATTGGTAC GGCCACCACA
GATGAAGGCG CGCAGCGCAT CGGCCAGGCC CTGGTGGCCT ACGGCGGCAA GGGCGTCAAA
CTGAACGTGA CCGACGGCGC AGCCGTGGAC GCGCTGGTGG ATGCCATCGT CAAGGAGCAT
GGGGGCCTGC ATGTGCTGGT GAACAACGCT GGCATCACGC GTGACACGCT GGCCATGCGC
ATGAAGGACG ACGACTGGGA TGCCGTGCTT GACACCAATC TCAAGGCCGT TTTCCGCGTT
AGCCGTGCGG CTATTCGGCC CATGATGAAA CAGCGCTTTG GGCGCATCAT CAGTATCACC
AGCGTGGTGG GCGCATCGGG CAACCCCGGA CAGGCCAACT ACGCGGCCGC GAAGGCTGGT
GTGGCTGGTA TGACCCGCGC GTTGGCGCGT GAACTGGGCA GCCGCGGTAT CACGGTGAAC
TGCGTGGCTC CGGGCTTCAT TGCCACCGAC ATGACTGCCG ATCTGCCGGA AGAGCAGAAA
AAAGCGCTGA AATCCCAGAT CGCCATGGGC GAATTGGGGC AGCCCAGTGA CATCGCCCAT
GCCGTGGCTT ACCTTGCCTC GGCTGGTGCA GGTTATGTGA CGGGACAGGA GTTGCATGTC
AATGGCGGCA TGTACATGTA A
 
Protein sequence
MSESASPQIA LVTGATRGIG AAIAAELAQR GLRVIGTATT DEGAQRIGQA LVAYGGKGVK 
LNVTDGAAVD ALVDAIVKEH GGLHVLVNNA GITRDTLAMR MKDDDWDAVL DTNLKAVFRV
SRAAIRPMMK QRFGRIISIT SVVGASGNPG QANYAAAKAG VAGMTRALAR ELGSRGITVN
CVAPGFIATD MTADLPEEQK KALKSQIAMG ELGQPSDIAH AVAYLASAGA GYVTGQELHV
NGGMYM