| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3271 |
|---|
| Symbol | |
|---|
| ID | 4673502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3456428 |
|---|
| End bp | 3457858 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639840311 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_987470 |
|---|
| Protein GI | 121595574 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.168434 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATCG CCTTGGCAAT GGGCGGCGCA GGCTTGGTGG TGGCGCCCGC TTCGGTGCAG
GCCCAGCCTG CTGCCGTGGT GCGTGGCTTG CCTGACTTCA CCGAACTGGT CGAGCAGGTG
GGACCGTCCG TGGTGAACAT TCGCACAACC GAGAAGGTGA CGGCGAGGCC CTCCATCGGA
GGCATGGATG AAGACATGCT GGAGTTCTTC CGGCGTTTTG GTGTCCCGGT GCCCAACATT
CCACGCCAGC AGGGGCCGCA GCGTCCGCAG CCCGAAGAGC AGCCGCGTGG CGTGGGGTCG
GGGTTCATTC TGAGTCCTGA CGGCTATGTC ATGACCAACG CCCACGTGGT GGAGGGGGCG
GACGAAGTGA TTGTGACGCT GACCGACAAG CGGGAGTTCA AGGCCAAGAT CATCGGCTCG
GACAAGCGCA CCGACGTTGC CGTCGTCAAG ATCGACGCCA CGGGACTGCC CGCGGTAAAG
GTGGGTGACG TGGGCCGTCT TAAGGCGGGT GAATGGGTCA TGGCAATCGG CTCTCCCTTT
GGCCTGGAAA ACACCGTGAC CGCCGGCATC GTAAGTGCCA AGCAGCGCGA TACGGGCGAC
TATCTGCCCT TCATCCAGAC GGACGTGGCC ATCAATCCCG GTAACTCCGG CGGCCCTCTG
ATCAACATGC GGGGTGAGGT GGTGGGCATC AACAGCCAGA TCTACTCCCG CTCCGGCGGA
TTCATGGGTA TCTCGTTCGC CATTCCCATT GACGAGGCCA TGCGCGTGAG CGAGCAACTG
CGTGTGAGCG GTCGCGTGAG CCGTGGCCGC ATTGGTGTTC AGATTGGCTC GGTTCCCAAG
GATGTGGCGG AGTCCATCGG GCTTGGCAAA ACCGACGGCG CGCTGGTGCG CGGCGTGGAG
ACTGGATCCC CCGCGGAGAA GGCTGGCATC GAGGCGGGCG ACGTGATCAC GCGCTATGAC
GGCAAGGCCG TCGAGAAGGC GTCTGACCTT CCCCGCTTGG TGGGCAACAC CAAGCCAGGC
ACCAAGACCC ATATCACGGT GTTCCGCCGT GGCGCATTGC GCGACCTGTC GATCACCATC
GCCGAGGTGG AGCCTGATGA AAAGGTGGCA GCCAAGGCAG CCGAAGCAGA AGGCAAGGGC
AAGTCCTCGA CAGCGGCTCA GCAGATCGGC TTGGTCGTTG CCGACCTGAC CGCTGCGCAG
GCGAAGGAAC TGAAGGTGAA GGGAGGGGTG CGCGTGGTCT CTGCCAACGA CGCGGCGGCG
CGTGCCGGTC TGCGGGCAGA CGATGTGATC ATCGCGCTGG CTAACACCGA AGTCCGTAAC
CTCAAGGATT TCGAAGCGGT ACTAGCGAAG GCTGACATGG GGAAACCCAT CAACGTGCTT
TTCCGTCGCG GCGAATGGGC GCAATATGCA CTGATCCGCC CGAACCGCTA G
|
|---|
| Protein sequence | MAIALAMGGA GLVVAPASVQ AQPAAVVRGL PDFTELVEQV GPSVVNIRTT EKVTARPSIG
GMDEDMLEFF RRFGVPVPNI PRQQGPQRPQ PEEQPRGVGS GFILSPDGYV MTNAHVVEGA
DEVIVTLTDK REFKAKIIGS DKRTDVAVVK IDATGLPAVK VGDVGRLKAG EWVMAIGSPF
GLENTVTAGI VSAKQRDTGD YLPFIQTDVA INPGNSGGPL INMRGEVVGI NSQIYSRSGG
FMGISFAIPI DEAMRVSEQL RVSGRVSRGR IGVQIGSVPK DVAESIGLGK TDGALVRGVE
TGSPAEKAGI EAGDVITRYD GKAVEKASDL PRLVGNTKPG TKTHITVFRR GALRDLSITI
AEVEPDEKVA AKAAEAEGKG KSSTAAQQIG LVVADLTAAQ AKELKVKGGV RVVSANDAAA
RAGLRADDVI IALANTEVRN LKDFEAVLAK ADMGKPINVL FRRGEWAQYA LIRPNR
|
|---|
| |