| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3236 |
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| Symbol | |
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| ID | 4671947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 3419322 |
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| End bp | 3422078 |
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| Gene Length | 2757 bp |
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| Protein Length | 918 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639840276 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_987435 |
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| Protein GI | 121595539 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCTTT TTACATATTT TCACGCGCCT GGGCGGCTCG ATCACGACCA GAAAAATACC
GCCCCCTCGG CACCATCCAT CTCTTCATTC GTCGCACACA TGCATCGCTG GAAATTTTCT
GTCCTGGCCA CCGCGGCCAT CCTCTCGGCT GGTCTTTACA CCACCGATGC AAGTGCTCTC
GCCCTGGGCC GCGTGAATGT CCAGTCGGCG CTTGGCGAGC CCCTGCGCGC GGAAATCGAA
CTGCCCCAGA TCACTGCTGC CGAGGCCGAA TCGCTGCGCG TGAGCACCGC CAGCCCTGAA
GTTTTCCGCA GCCAGGGCAT GGAATATTCC CCCGCTGCGC ATAGCGTGCA AGTGCAACTG
CACCGCCGCA CGAATGGCTC CATGGTGCTG CGCTTGAGCA GTACCCGCCC GGTCAACGAT
CCTTTCGTGG ATTTGGTTAT CGATGCGACC TGGAGTTCCG GCCATATCGT GCGTAGCTAC
ACGATGCTGT TCGACCCGCC GGCGAGCCGC CCGCAGGCGG CGGTGACCGC AGCCCCTCAG
GTAACGTCAC CCCGTGCCGC GGCAACTGCG CCGCGCGCCC CCGCCACCAC CGCGGCGCCC
GCGCCTGCCG CACGCCCAGC AACCCCTCCC GCACCCGCCG TAGCCGGCCG TCCCACCCCC
GCAGAGGCAC CCGCGTTCGC TGGCGGTGAC GAGATTCGCG TGCGCCCCGG GGACACGGCC
GGCCGCATCG CGGAAGCCCA TCGCCCCGCT GGCGTCTCGC TGGACCAGAT GCTGGTAGCA
ATGATGCGCG CCAATCCGGA CGCGTTCGTC AACAGCAATG TGAATCGTCT GCGTTCCGGC
GCAGTGCTGC AGATGCCTAG CGAAACGGAG GCGCAAGCCA CGGACGCCAC CGAAGCTCGC
AAGATCGTCG CCGCGCAAAG CCGCGATTTC AATGAATTCC GTCGCCGCAT GGCAGCGACA
GCGCCCAAGG CCGAGGTTGC AGCCGCAGAG CGCTCCGCGC GCGGCACTGT GCAGACCCAG
GTGGACGAGA GCAAGCCCGC CGCTGCCGGC CCCGATAAGC TCACTCTCTC CAAAGGCAGC
GTTCAGGCCC AGAAGACCGA GGAGCAGATG GCCCGCGACA AGCAGGCCGA ACAGAACAGC
GCCCGCATGG CAGAGCTGTC CAAGAACATC TCGGACCTGA ACCAGCTCAG CGGCGCCTCC
GCGCCAGCCG GCGCTGGCGC AGCTGCGCCA AGAGCCACGG CGCCTTCCGC CCCTGCCAGC
CAGCCGGCGG TGGCAGTACC CGCCGCCGGG GGGTTGCCCG CACCCGCTAC CGCGGCTGCA
AGCGCCGACA TGAGCACTGC TACGGCAGAA GCTGCCGCAC CAGCGCCCGA GGCCTCTGCC
GCCGAGGCGG CTGTTCCCGC CGAAGCAGCA TCCCAGGCTT CTGCCGCAGC ACCCGCTCCC
GCCGCCGTGG CCCCGCGTCC AGCCCCCCAG CCCGTTCCCT ACGAAGAGCC CAGCTTCCTG
GATGCCCTCA CGGAGGACCC GCTGCTGGCT GGAGGCGCGC TGGCGCTCGT ACTTGCGTTG
CTGGGCTATG GCGGCTACCG CGTGGTCCAA AGCCGCCGCA ACCAGGGTGC CCTGGACAGT
TCGTTCTCGG AAAGCAGCCT GCAGCCGGAT TCTTTCTTCG GCGCCAGTGG CGGCCAGCGT
GTGGACACGG CCAACAGCGA ACTCACGACC GGCTCCTCGT TCATGACCTA TTCGCCCAGC
CAACTGGATG CCGGTGGCGA TGTGGATCCG GTGGCGGAAG CCGACGTCTA CCTCGCCTAC
GGCCGTGACC TGCAGGCGGA GGAAATTCTC AAGGAGGCGC TGCGCCACCA TCCGGAGCGC
GTCTCCATCC CCGCCAAACT GGCCGAGATT TATGCCAAGC GCCAGGACCG CAAGGCGCTG
GAGTCCGTCG CCAACGACGT GTTCCGGCTC ACCAACGGCC AGGGGCCCGA CTGGACCCGC
GTGTCCGACC TGGGCCGTAC GCTCGACCCT GAAAATCCGC TGTACCAGCC CGGTGGCCGT
CCTGCCGTTG CCGCCAGCGC CACAGCGGCC GCTGCATCGA CCGCGGCCTT TGCAAGCACG
CTGGGCGCAG CAACTGCTCC CGCGACACCC ACGGGCGGAC CGGACTCTGT GCTGCCAGAC
CTCGATCTGG ACTTGGATCT CGACCTGCAC GAAGCACCGT CGGCCCCGGC CCCGGCGCCA
AGCACGTTTG CCATGGCCGC AGCCAACAAC ACCGCCGCAG CCGCGCCGGT AGTGTCGGCC
GCCCAGGCGC CCGTCCCGTC CCTGGATCTG GGCGACCTGG AACTACCCCA GGCCTCCTGG
GACGAGCCAG CGGTGACGCC GCAGGCGACG ACAGAGCCCG ACGTGCAAAG CGAGCCTCTT
CCGTTGAACC TGGACGATGA CTTGTCCCTG ATGGACTCCG GCGTCGCCCC CCTGACCAGC
CGCGACGCGA AGGCTGTCAC CTCGGAATCC CTGGAATTCG ACCTCGGCGA TCTGTCGCTG
GACCTTGACA CCCCCACGGC GGCCGCTCCC GTCGCGCCCT CGGTCGCCGC CAAGGCAGCG
TCCTCCGCTG CCGACGCGCT GCCGGACGAC CCTCTGGCCA CCAAGCTCGC ACTGGCGGAA
GAGTTCAACA CCATTGGCGA CAGCGAAGGC GCGCGGGCCC TGGTGGAAGA GGTCATCGCC
GAATCGTCCG GTGAGCTGAA GGCCCGCGCC CAGCGACTGC TCGCCGAACT GGGCTGA
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| Protein sequence | MVLFTYFHAP GRLDHDQKNT APSAPSISSF VAHMHRWKFS VLATAAILSA GLYTTDASAL
ALGRVNVQSA LGEPLRAEIE LPQITAAEAE SLRVSTASPE VFRSQGMEYS PAAHSVQVQL
HRRTNGSMVL RLSSTRPVND PFVDLVIDAT WSSGHIVRSY TMLFDPPASR PQAAVTAAPQ
VTSPRAAATA PRAPATTAAP APAARPATPP APAVAGRPTP AEAPAFAGGD EIRVRPGDTA
GRIAEAHRPA GVSLDQMLVA MMRANPDAFV NSNVNRLRSG AVLQMPSETE AQATDATEAR
KIVAAQSRDF NEFRRRMAAT APKAEVAAAE RSARGTVQTQ VDESKPAAAG PDKLTLSKGS
VQAQKTEEQM ARDKQAEQNS ARMAELSKNI SDLNQLSGAS APAGAGAAAP RATAPSAPAS
QPAVAVPAAG GLPAPATAAA SADMSTATAE AAAPAPEASA AEAAVPAEAA SQASAAAPAP
AAVAPRPAPQ PVPYEEPSFL DALTEDPLLA GGALALVLAL LGYGGYRVVQ SRRNQGALDS
SFSESSLQPD SFFGASGGQR VDTANSELTT GSSFMTYSPS QLDAGGDVDP VAEADVYLAY
GRDLQAEEIL KEALRHHPER VSIPAKLAEI YAKRQDRKAL ESVANDVFRL TNGQGPDWTR
VSDLGRTLDP ENPLYQPGGR PAVAASATAA AASTAAFAST LGAATAPATP TGGPDSVLPD
LDLDLDLDLH EAPSAPAPAP STFAMAAANN TAAAAPVVSA AQAPVPSLDL GDLELPQASW
DEPAVTPQAT TEPDVQSEPL PLNLDDDLSL MDSGVAPLTS RDAKAVTSES LEFDLGDLSL
DLDTPTAAAP VAPSVAAKAA SSAADALPDD PLATKLALAE EFNTIGDSEG ARALVEEVIA
ESSGELKARA QRLLAELG
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