| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3188 |
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| Symbol | |
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| ID | 4672217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 3370447 |
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| End bp | 3373911 |
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| Gene Length | 3465 bp |
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| Protein Length | 1154 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639840228 |
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| Product | type 4 fimbrial biogenesis protein PilY1 |
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| Protein accession | YP_987387 |
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| Protein GI | 121595491 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.444073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.594589 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTTCC ATGCAAGCGC CCGCCGCCAT TTTCGACAAA CACCACTGGC CGTTTTGATT
GGCGCCGCTC TCTCGTCGCA GAGCGCGCTG GCCGCGTTGG ATTTTGCGCA GGCCCCGCCC
GGTACGGTGG AGCCTTATGT TGCACCGAAC GTAATCATCT CTATCGATGA CTCAGGCAGT
ATGAATTGGC GGTTGGACAG GGAAAATGAT AGAGGCGCCA CGGATAACGT CACTCCTACC
AATGGTTCGT GGCTCAGTAC TGATCGCCGC ATGAACGTAT TGAAATATGC ACTCAAGCAA
GTTTTCAACG ACACAAGCTT GCTGCCAGAC GGAAAGATTC GACTGGCTTG GCAAGTAATG
CACAACAATG GGGATGCACC AGACGCCAAA AACGTGGACT CCGACACCAT GAAGACAAAC
TCTATGCGAG TGCTGAAGGG AAGCCACCGA GACAACTTCA TTAGCTTCAT CAACAGTCTG
AGGCCCAATA ACGGAACGCC AACCCATAAA ATGTTCAAAC AAGCCGATGA CTATATGCGT
CGGGAACTGG GCATAAACAG CCCCTGGGCG TCAGAGCCCG GAGTGAAGGA TAAGCCTTAC
CTGGGTTGTC GACGCAATTA CCACATTGTG ATGACTGATG GGCGATGGAA CAGTTATTCT
GACACCTACC AGACAGGGAA CTTGGACGGA GCTTCCTCCA CCGAATTGCC CGATGGCACC
AAATATGGCT CAGCCACGGA CCAAAAAGAC TACACAAAAC TCTACCGCGA CGAAACGGAA
AATACTCTCG CCGATTGGGC ATTCAAGAGC TGGTCAGATC CCCTTCAATC CAGTGGTCTG
ACAGGTCAAA TATTCCCCCC CAGCGAGTAC GACCGAGCTC CAGCGACCGA ACTGATTGGT
GGTGTGAACC TGCCAAAATA TTGGAATCCC GCATTTGACC CTGCCAACTG GCCGCACATG
GTGACTTACA CCATCGGCTT CAGCGCGATG GCCTATACGT GGAAAACCGA TTTCTCGGAT
GCAAAATACA ACATCACCCG TCCGACCACA ATGGTCCCGT TCGGCTACGA CGGCGACTTT
CCCAACTTGG TGAATGGGAC CAAGACTTGG CCAAATATGT CCAATGAAGA TAGGCGTTCG
CTAGATTTGT GGCACGCTGC ACTCAACGGT CGCGGCCGGT TTTATGCCGT TGAGCGCGGG
GAAGATCTGG AAAAAGCCTT TCGTGAAATC GTCAAGCAAA TCAACGCCCA AACAGAGCCA
GACCGAGGCT CCACCGCCAC CAGCGGTAGC AATGCATCAC AAAACGACGT AGGCATTTTC
ACTGCGAGCT ACGTGCCCAA GGAAGGCTGG CGTGGCGCCG TCTCAGCCGA AACCTTCAAA
AGCGACGATG GTTCCACGGA ACAAGCCTGG GAAGGCAAGA CCACTGCAGA CAAGCTTGAT
GACCCATCGT TCAATGTTTC CAATCGCCTG GTGCTTACTT GGAGCGACGC GATTCCCAGT
GGAAGTACCA AGGAAATCGG GGGCACATCC TTCGAATGGG CCAGCCTCAG CGAGGCTCAG
CAAACCCTCC TCAAAGCAAC CGGAGCAGAT GGAGGGCCCT CAGGGACTAC AGGGGAAAGC
GGTGCCAACC GTATAGCCTA TTTGCGGGGT GACCGCAGCC TGGAGTGCCC TAGCTCCGGC
TGTACTACGG ACAAGCCGTT CAGGCAGCGC TGGAGCCGGC AGGGCAGCAT CGTCAATTCA
GAAGTCTGGT ACGTGGGTGC TCCTGTGAGC AACTACGCGC TAGATGGGTA CGCAGCGTTC
ACCCGCACGT GGGCCAAGCG CGAGCCCATG CTGTATGTAG GTGGAAATGA TGGGATGCTG
CACGGGTTCA CAGCGAAGGA TGGAACGGAA CGCCTCGCCT ATGTCCCGCG CGGCGTGATG
CGTGACCTTC CCAAGCTCAC CAATCCGTCG TTCAACAACA ACCACCAGTA TTTCGTCGAC
GGCTCGCCGA TGACCGGCGA CGTATTCGAT GGCGCGTGGA AAACGCTCTT GGTGGGCACC
CTCGGGGCCG GTGGCAGAGG CTACTTTGTT CTGGACGTGA CGAACCCTGG CACCACCGAT
GGCGGCGCCA GCAGCTTCAC CAAGGCCAAT GCCAACAACC TGGTTGTGAT GGACAAAACG
CTGCCGGCCA GTACGACACC GGTGAACAAT GATGCCATCG ACGATCTGGG GCACATCTTT
GCCAAGCCGG TGCTGGATGA CGCCAACCCC CAACGCACCA CGCAAATCGT GCGGCTGAAC
AACAACCGCT GGGCCGTCGT CATGGGTAAC GGGTACAACA GTGCCAACGG ACGGCCTGTA
CTGTTAATCC AGTACCTCGA CCGCAACAAA GAACTGCTGC GCATCCCGGC GGTAGCAACG
GACAGCGGAA ACGGCCTTTC AGCTCCTCGG CTCGTAGACA TTAGTGGTGA TGGCAAGCCC
GATGTCGTAT ACGCAGGGGA CCTTAAGGGC AACCTTTGGA AGTTCCTCAT CAACACGGAA
GATTCAAGCA GTTGGGGTGT CGCCAGTTGG GAAGGCAAAC CTGCCGGCAC GCCACTGTTC
ATTGCGAATC GAGGCACTGG CCACTCTGCC AACACGAACA GTTCCACCCG GCAATCCATT
ACCGCTGCCC CCTCGGTACG GGTGAACGAC CGCACCAAGA CCGTCACCGA AGGCGGTGTG
GACAAGACTC TGCCTGTGGG AGGGATGATG GTCGCCTTTG GCACGGGCCG GAACATCACC
AAGCTCGACC AGGCTGAGTT GCAGCAGCAG ACTTTGTACT CCGTCCTGGA CAACACCCGT
TACGTCCGCG AGATGGGCAC CGCACCCAAT GAAAAACCCA CCGGACGCGT CAATGTATGC
ACCACCACCT CCGGTGTCTG CGGTGAACTG GTCAAGTCCA GTGCCGATCT GCCCCGTGCC
GTATCGCAAG ACGAACTGGT CCAGACCACG GTACCCAGTA CTGTGGCGCA GACCCGCGAT
GGGCGGCAGT TCTGGAAAGT GAACGCCACT ACCATCAACT GGGCGGAAAA GAAGGGCTGG
TTCATGGACT TCCCGCTGAC GCGCGAGCGC CTGCTCAAGC CGATGCAGTT CTATGACGGC
AGCAATCTGC TTGTGGTCCC GTCACAAATC CCCGCAAAGG GCTCTCGTCT GGATCCCTCT
GTCGAAAGCT GTGAAGGGGG TGCCGTGGAC AAGGAAACCC AGTATGTGAC CTTCATCAAC
ATCATGGATG GCCAAGCACC GCGCGTGCCT ATCATTGATG GCCCCACTGG ACTGGCACGC
TATAGCATGC CGCCTGGGGC TCTGACGATG ATCACGAAGG ACAATCGCAT CCACATGCGA
GGCCGGCAGC CTAAGCCGGG CGGAACGGGT TCCGACCTCG TCGAGGAGAA GATGCGCCGC
ATGCCCGAAA TGTCCCTGCG CCCCAACTGG CGGCAGCTCA AGTAA
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| Protein sequence | MPFHASARRH FRQTPLAVLI GAALSSQSAL AALDFAQAPP GTVEPYVAPN VIISIDDSGS
MNWRLDREND RGATDNVTPT NGSWLSTDRR MNVLKYALKQ VFNDTSLLPD GKIRLAWQVM
HNNGDAPDAK NVDSDTMKTN SMRVLKGSHR DNFISFINSL RPNNGTPTHK MFKQADDYMR
RELGINSPWA SEPGVKDKPY LGCRRNYHIV MTDGRWNSYS DTYQTGNLDG ASSTELPDGT
KYGSATDQKD YTKLYRDETE NTLADWAFKS WSDPLQSSGL TGQIFPPSEY DRAPATELIG
GVNLPKYWNP AFDPANWPHM VTYTIGFSAM AYTWKTDFSD AKYNITRPTT MVPFGYDGDF
PNLVNGTKTW PNMSNEDRRS LDLWHAALNG RGRFYAVERG EDLEKAFREI VKQINAQTEP
DRGSTATSGS NASQNDVGIF TASYVPKEGW RGAVSAETFK SDDGSTEQAW EGKTTADKLD
DPSFNVSNRL VLTWSDAIPS GSTKEIGGTS FEWASLSEAQ QTLLKATGAD GGPSGTTGES
GANRIAYLRG DRSLECPSSG CTTDKPFRQR WSRQGSIVNS EVWYVGAPVS NYALDGYAAF
TRTWAKREPM LYVGGNDGML HGFTAKDGTE RLAYVPRGVM RDLPKLTNPS FNNNHQYFVD
GSPMTGDVFD GAWKTLLVGT LGAGGRGYFV LDVTNPGTTD GGASSFTKAN ANNLVVMDKT
LPASTTPVNN DAIDDLGHIF AKPVLDDANP QRTTQIVRLN NNRWAVVMGN GYNSANGRPV
LLIQYLDRNK ELLRIPAVAT DSGNGLSAPR LVDISGDGKP DVVYAGDLKG NLWKFLINTE
DSSSWGVASW EGKPAGTPLF IANRGTGHSA NTNSSTRQSI TAAPSVRVND RTKTVTEGGV
DKTLPVGGMM VAFGTGRNIT KLDQAELQQQ TLYSVLDNTR YVREMGTAPN EKPTGRVNVC
TTTSGVCGEL VKSSADLPRA VSQDELVQTT VPSTVAQTRD GRQFWKVNAT TINWAEKKGW
FMDFPLTRER LLKPMQFYDG SNLLVVPSQI PAKGSRLDPS VESCEGGAVD KETQYVTFIN
IMDGQAPRVP IIDGPTGLAR YSMPPGALTM ITKDNRIHMR GRQPKPGGTG SDLVEEKMRR
MPEMSLRPNW RQLK
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