| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3131 |
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| Symbol | |
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| ID | 4673369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 3305745 |
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| End bp | 3307724 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639840172 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_987332 |
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| Protein GI | 121595436 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.463541 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.521574 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATGC GCAAGGAACT GTGGTTCGGC TTTGCCATCA TGGCGCTGGT GGTGGCCGGC
GCCGTCGGGA TGCTGCTGGG CGTGGAGACC GTCACGCGCG GCCACCTGGG CTTGCTGATG
CTGTCGCTGG TGGTGGTGGC CATCATGCTG GGTTTTCCCA CCGCGTTCAC GCTCATGGGC
ATGGGCATGA TCTTCACCTG GCTGGCGTAC GACCGCGACA TCACGCGCAC GCTGGACCTG
ATGGTGCAGG CGGCTTACAA GAGCATGGCC AACGACGTGC TCATCGCCAT CCCATTGTTC
GTGTTCATGG GCTACCTGGT CGAGCGGGCC AACCTGATCG AAAAGCTTTT CAAGAGCCTG
CATCTGGCCA TGGCGCGCGT GCCGGGTTCG CTGGCCGTGG CCACGCTGAT CACCTGCGCC
ATCTTCGCCA CCGCCACGGG CATCGTGGGC GCGGTGGTCA CGCTGATGGG CCTGCTGGCG
CTGCCGGCCA TGCTGCGCGC GGGCTACAGC ACGCCCATGT CGGCCGGCGC GATCACGGCG
GGTGGCTGCC TGGGCATCCT GATTCCGCCG TCGGTGCTGC TGATCCTGTA TGGCGCCACG
GCGGGCGTAT CGGTGGTGCA GCTGTACGCG GGCGCCTTCT TCCCCGGCAT CATGCTGGCG
GGCCTGTATG TGATGTACGT GATCCTGATG GCCAAGCTCA AGCCGGCCTG GGCGCCGCCG
CTGTCGGCCG AGGAGCGGCA GGTGGTGCTG CCGGCCATGA CCGCCGCGCT GCCCGCCGAG
ACACAGCAAT ACGCCCCCGC GCGCTTGCTG GATGCCCTCA AGGGCAAGCG CAATGCGCAG
GTACCCACGG CCTATGTGCT GCGGCAACTG GCACTGGTGG TGATGCCGGG GCTGCTGTTC
GTACTGCTGG CCACCAGCAG CTGGCGTGCG GTCACCACGG TGTCGGTGGA GGAGGCGTAC
AGCATCCAAC CCATCGGCTT CAACGACAAC TCGTCCCGGG TGGCGTCGGA GTTTGGCTTG
CAGGAGCCGC CGGTGGAGGG CGGTCTGCAA GAACCGCCGC AGGAATCCAC GGGCCTGCAG
GAGCCTCCGG GCGCGGACAG TGGTGCGCTG GCCGAGCCCC CCGGCGCCGA GCCCGCGCAG
TCCGCCCCAT CCGCCCAATC TGCCCAATCT GCAGTGGGGG AGCCACCCGG CTCCACCGCA
GGTGCCACGC CCCAGGCCGC CACGCAACCC GCGCCCACCT GGTGGTGGGT CATGTTTGGC
GTGCTGGGTG CGGCCACCGC GCTCTTCTAT CTGTTCCTGA GCTTCGCGCG GCTGGAAATC
TTCAAGATGC TGCTGGGCTC GTTCTTCCCG CTGCTGACAC TGATCATGGC CGTGCTGGGC
TCCATCGTGT TCGGTCTGGC GACGCCGACC GAGGCGGCGG CCATGGGGGC GTTCGGCGGT
TTCGTGCTGG CCGCGGCCTA CAAGCGCCTG AGCATGGATG TGGTGCGCGA GTCGGTGTAC
CTCACGGCCA AGACCTCGGC CATGGTGTGC TGGCTGTTCG TGGGCTCGGC CATCTTCTCC
GCGGCCTTCG CGCTGCTGGG TGGGCAGGAG CTCATCGAGC AGTGGGTGCT CTCCATGAAC
CTGAGCAAGA TCGAGTTCAT GGTGCTGTCG CAGGTGGTGA TCTTCCTGCT GGGCTGGCCG
CTGGAGTGGA CGGAGATCAT CGTGATCTTC ATGCCCATCT TCATTCCGCT GCTGAGCCAC
TTCGGCGTGG ACCCGTTGTT CTTCGGCCTG CTGGTGGCGC TGAACCTGCA GACCGCCTTC
CTGTCGCCGC CCGTGGCCAT GTCGGCGTTC TACCTGAAGG GCGTGGCGCC GCCGCATGTG
ACGCTCAACC AGATCTTCCT GGGCATGCTG CCGTTCATGG GCATCCAGGT GCTGGCGATC
GTGCTGCTGT ATGTGTGGCC GCAGATCGGT TTGTGGCTGC CGCAACTGCT CTACAAGTGA
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| Protein sequence | MKMRKELWFG FAIMALVVAG AVGMLLGVET VTRGHLGLLM LSLVVVAIML GFPTAFTLMG
MGMIFTWLAY DRDITRTLDL MVQAAYKSMA NDVLIAIPLF VFMGYLVERA NLIEKLFKSL
HLAMARVPGS LAVATLITCA IFATATGIVG AVVTLMGLLA LPAMLRAGYS TPMSAGAITA
GGCLGILIPP SVLLILYGAT AGVSVVQLYA GAFFPGIMLA GLYVMYVILM AKLKPAWAPP
LSAEERQVVL PAMTAALPAE TQQYAPARLL DALKGKRNAQ VPTAYVLRQL ALVVMPGLLF
VLLATSSWRA VTTVSVEEAY SIQPIGFNDN SSRVASEFGL QEPPVEGGLQ EPPQESTGLQ
EPPGADSGAL AEPPGAEPAQ SAPSAQSAQS AVGEPPGSTA GATPQAATQP APTWWWVMFG
VLGAATALFY LFLSFARLEI FKMLLGSFFP LLTLIMAVLG SIVFGLATPT EAAAMGAFGG
FVLAAAYKRL SMDVVRESVY LTAKTSAMVC WLFVGSAIFS AAFALLGGQE LIEQWVLSMN
LSKIEFMVLS QVVIFLLGWP LEWTEIIVIF MPIFIPLLSH FGVDPLFFGL LVALNLQTAF
LSPPVAMSAF YLKGVAPPHV TLNQIFLGML PFMGIQVLAI VLLYVWPQIG LWLPQLLYK
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