Gene Ajs_3110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_3110 
Symbol 
ID4672391 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp3283751 
End bp3285007 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content72% 
IMG OID639840151 
ProductBcr/CflA subfamily drug resistance transporter 
Protein accessionYP_987311 
Protein GI121595415 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGTCC CGTCCGCCGC CATCGGCCCG CAGCAGGCGC CTGCGGTACC CGTGCCTGTG 
CCTCCCGGCC TGGCCATCCT GGTGCTGGCC CTGCTGCTGA GCATCCAGCC CGTCACCACC
GATCTGTACC TGCCCGCCCT GCCCGCGCTC ACGCGCAGCC TGAACGCACC CGTGGCCGCA
GGCCAACTCA CGCTGTCCGC GCTGCTGCTG GCCTTTGGCT GCTCGCAACT GGCATGGGGG
CCGCTGTCCG ACCGATTCGG CCGCCGGCCG GTGCTGCTCA CCGGGCTGGC GCTGTACACG
CTGGCGGCGG TGGGTGCGGC GCTGGCGCCG TCCATGGCGG TGCTCATTGC CTGGCGCACG
GCCCAGGGCG TGGCCATGGG TGCCGTGGTG ATGTGCGCGC GCGCCATCGT GCGCGACCTG
TACACGCCGC TGGCGGGCGC ACGCGCCATG TCCAAGGCGC TGACCGGCTT GGGGCTCGTG
GCCTGCCTGT GCGCGCCGCT GGGCGGGTTG CTGACCGAAT GGTTCAACTG GCGCGCGGCA
CTGCTGGCGC TCACCGGCTA CGCCATGGGC ACGTTGGCGC TGGTGGCGCT GCGCATGCCC
GAGACGCTGC ACCAGCGCAA CCCGCACGCC CTGCGCCCCG CCATGCTGGC AGGCACCGCG
GCGCAGGTAT TGCGCACGCC CGCGTTCTGG GCGTTCTCGC TGCTCACCAC GGCCAGCTAT
GGCGGGCTGT TCACCTTCCT GGCTGCTTCG TCCTTTGTCT ATCTCGACGT GCTGGGCATT
TCGCGCACGC AGTACGGGCT GGCGCTGCTG TCCACGGCCG TGGCGTACCT GCTGGGCACG
CTGCTGTGTC GGCGGCTGCT GGCGCGCCAG GGCCTCAAGC GCACGGTCGC CATCGCCGGC
GCGCTGTCGG CCAGCGGCGG CCTGCTGATG TTGCTCGCCG CCGCGCTGGG CTGGCATAGC
GTGGCCGCGC TGCTGCCGCC GTTCTACCTC TACATGGTGG GCCACGGCAT CCACCAGCCC
TGTGGGCAGT CGGGCGCGGT GGGACCGTTC CCGCAGGCGG CGGGCATGGC CTCGGCACTC
AATGGTTTCA TGATGATGCT GGCGGGCTTC GCCATCGGCC AGTGGCTGGG CGGGGCGCTG
GACGGCAGCG TGTGGCCGCT GGTGCAAGGC GTGGCCCTGT GGTCGCTGCT GCTGGCCGCC
ATTGCCTGGA CGCTGGTGCA GCGCCATGCC CCGCAGGAGG TTACCCATGC CCGCTGA
 
Protein sequence
MSVPSAAIGP QQAPAVPVPV PPGLAILVLA LLLSIQPVTT DLYLPALPAL TRSLNAPVAA 
GQLTLSALLL AFGCSQLAWG PLSDRFGRRP VLLTGLALYT LAAVGAALAP SMAVLIAWRT
AQGVAMGAVV MCARAIVRDL YTPLAGARAM SKALTGLGLV ACLCAPLGGL LTEWFNWRAA
LLALTGYAMG TLALVALRMP ETLHQRNPHA LRPAMLAGTA AQVLRTPAFW AFSLLTTASY
GGLFTFLAAS SFVYLDVLGI SRTQYGLALL STAVAYLLGT LLCRRLLARQ GLKRTVAIAG
ALSASGGLLM LLAAALGWHS VAALLPPFYL YMVGHGIHQP CGQSGAVGPF PQAAGMASAL
NGFMMMLAGF AIGQWLGGAL DGSVWPLVQG VALWSLLLAA IAWTLVQRHA PQEVTHAR