| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3104 |
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| Symbol | |
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| ID | 4672166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 3275710 |
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| End bp | 3277812 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639840146 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_987306 |
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| Protein GI | 121595410 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACCGC CCGAGCATGT TGCCGCGTGG GAAGACGTGG CGCCCGAGCG GGAGCCTGAA
GGCTTCGCAT GGCTGCCCGG TCCGCTGGTG GGCAAGCTGC TGGCGGTGGC GGCGCTGGCC
ATCGTGCTCT CCGCAATGCT CACCGTGTGG GTGCTGTCGC GCGCCGCGGG CCAGGAGGTC
ATGCAGCGCC TGGTCAGCCA GCAGAACGAC GAGGTGGAAC TGGTGGCGCG GTTGCTGGCC
AGCAAGATCG AGCAGAGCCA GAAGGTGCTT GCCACCGTGG CCGAGGGCAT CACCCCCGAG
CTGTTGGAGT CTCCCGCGTC GCTGGAGTGG CTGCTGCAGC AGGGTCTGCC GGCCGTGCGC
TTCTTCGACG CCATCCAGGT TGCGCGCAAG GACGGCAACC TCGCCATCAA CCTGCGCTAT
GGCAAGCTGG AAAAGGCCTC GGGTCTGGAC CCGGGCGAGC GCGATTACCT CGTGCGCACG
CTGCTGGACG GCAAGCCGCT GGTGTCGGGC CTCATCGGCG CCACGCCGGC CGAGGCGCGC
GTGATGTTCA CCATGCCGCT GCTGCGGGGG GAGGGGCGCG TCATCGGGGC CGTGGCGGGC
GTGCTGCGGC TGCAATCGCA GGGACTGCTG CCGCATTCCC TGGCGCTGCC TGCGCGCAGC
GACTCGCAGC TGGTGGTGTT CACGCGCGAC GGGGTGATCC TGGCGCACCC CAATATGGAG
CGCGTGCTGG GCCAGGTGGC CGACGAGCCC GGCCTGGGCG AGGCCTATGC GCGCTGGCGC
CACGCGGACG ATGCGCCGCT GGCCGGGCGC GCGCAAACCA CCGTGCAGGC GGACCACGTG
GTGAGCTTGG CCAGCGTGCC CATGCCGCAA TGGGTGGTGG CCCGGGTGAG CGCTTCGCAG
GCCGTGCTGG CGCCAATGCA GGGCGTCCAG CGCCGGGCCT GGGCGCTCGC GGCCGCGGTC
ACGGCGCTGG TGGCCCTGTT GGCGCTGGGC GCCATGCTGT GGATCGCGCG CCCGCTGATC
CTGCTGCGCC AGCGTGCCCG AGCGCTGATG GACGCGGAGG CCGCTGGTGC GCCGGCGAGC
GGGTCCGCCG GGCATGACGG CCCATGGCCG CACAGCCCTG GCGAGGTGGA CGATGTGGTG
CGCGTCTGCA CCCGGTTGCT GGAACACCGG CGGCTGCAAC AGCGCGGGTC GGAAGCGTCG
GCGCGCCAGC TGCGTGCGGT GCTGGCGCAC GTGCCGCTGG GCATCGTTGT CAGTCGCGAC
GAGCAGGTGG AGGTCGTGAG CCAGCAGGCC GGCCGCATGC TGGGCTATGC GCCGGCGCAG
CTCCAGGGGC GCCGGCTGAC GGATCTGCTG GCCTCACCGC CCGGCGCAGC GGATGTGGCC
CAGCAGGTGC GTGCGCGGTT TGCGGCCCAC GGCAGCTTCG ATGGCGAACT GCCGCTGCTG
CGCAAGGACG GCAGCACGCT GTGGGTGCGG GCGCAGGGGC AACTGGTGGA GCCCGGCGTG
CCGTCCAGCG GCCTGGTGTG GACGCTGGAA GACTTCACTG CGGAGCGTGC AGCGCGCCAG
CAGCAGTCCT GGGAGCGCGC CCACGATCCC TTGACCCAAC TGCTCAACCG TGCGGAGTTT
GAGTTGCGCC TGCAGATGCT GCTGGACGCG CGTGCTGCGC GGGGCCCGCG GGGTGTGCCG
GAGGAAGACG GCGGGGTGCT GCTGTTCATG GACCTGGACC ATTTCACCGT GGTCAACGAC
GTTGCCGGCC ATGATGCGGG CGATGACGTA CTGCGCCATC TGGCACGTCT GCTCGAATCG
GAAGTGCGGC ACAACGGCTG GGCTGCGCGC GTGGGCGGCG ATGAGTTCGC CATCGTGCTG
CCCGGCAGCT CCTTGGCGCG CGGGCAGGCC GTAGCCGAGC AGTTGCGCGC CGCCGTGCAG
GCGTGGGAGC CCGCATATGG CGGGCGCAGC TTCACCCTGG GCCTGAGCGT GGGGCTGGTC
CCGCTGGCGC CTGGTGCGCA CGGTGTGGCG GCGCTGCTCT ATGCCGCCGA CATGGCCTGC
TACCAGGCCA AGCGCGCCGG GCGCAACCGC ATCGCCGTAG GCAGCGTGCA GGTACCGGCC
TGA
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| Protein sequence | MTPPEHVAAW EDVAPEREPE GFAWLPGPLV GKLLAVAALA IVLSAMLTVW VLSRAAGQEV
MQRLVSQQND EVELVARLLA SKIEQSQKVL ATVAEGITPE LLESPASLEW LLQQGLPAVR
FFDAIQVARK DGNLAINLRY GKLEKASGLD PGERDYLVRT LLDGKPLVSG LIGATPAEAR
VMFTMPLLRG EGRVIGAVAG VLRLQSQGLL PHSLALPARS DSQLVVFTRD GVILAHPNME
RVLGQVADEP GLGEAYARWR HADDAPLAGR AQTTVQADHV VSLASVPMPQ WVVARVSASQ
AVLAPMQGVQ RRAWALAAAV TALVALLALG AMLWIARPLI LLRQRARALM DAEAAGAPAS
GSAGHDGPWP HSPGEVDDVV RVCTRLLEHR RLQQRGSEAS ARQLRAVLAH VPLGIVVSRD
EQVEVVSQQA GRMLGYAPAQ LQGRRLTDLL ASPPGAADVA QQVRARFAAH GSFDGELPLL
RKDGSTLWVR AQGQLVEPGV PSSGLVWTLE DFTAERAARQ QQSWERAHDP LTQLLNRAEF
ELRLQMLLDA RAARGPRGVP EEDGGVLLFM DLDHFTVVND VAGHDAGDDV LRHLARLLES
EVRHNGWAAR VGGDEFAIVL PGSSLARGQA VAEQLRAAVQ AWEPAYGGRS FTLGLSVGLV
PLAPGAHGVA ALLYAADMAC YQAKRAGRNR IAVGSVQVPA
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