| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3088 |
|---|
| Symbol | |
|---|
| ID | 4671684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3259015 |
|---|
| End bp | 3259920 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639840133 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_987293 |
|---|
| Protein GI | 121595397 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.991899 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTGC GCGACATCGA CTTGAATCTG CTGGTGGTCT TCAACCAGCT ACTGCTCGAC
CGGAGCGTAT CGACGGCCGG CGAAAAACTG GGGCTGACGC AGCCTGCCGT CAGCAATTCA
CTTAAACGGC TGCGTGCGGC GCTAAAGGAC GATTTGTTCT TGCGCACCTC AAAAGGCATG
GAGCCGACAC CGTATGCACT GCATCTTGCG GAGCCCGTGG TCTATGCGCT CAACACGCTG
CAGACGGCAC TGACGACCCG TGACTCTTTC GACCCATTTG CCAGCACGCG CACCTTCAAC
TTGGCAATGA CCGACATCGG CGAGATGTAC TTCATGCCCC CACTGATGGA AGCGCTTGCG
CAACGAGCTC CTCACATCCA GATCAGCACG CTGCGCCCGA ATGCTGGCAA TCTGAAGGAG
GATATGGAAT CCGGTGCGGT TGATCTCGCC TTGGGTCTTC TGCCAGAGCT ACAGACCGGA
TTCTTCCAGC GGCGCCTCTT TCGCCTCCGC TACGTATGCA TGTTCCGCAA GGACCATCCA
AGCGCCAAAT CCCCCATGAG CCTGAGGCAG TTCAGTGAAT TGGAGCATGT CGGCGTGGTC
GCACTCAACA CCGGACACGG TGAGGTCGAT GGCCTGCTTG AACGCGCAGG CATCAAAAGG
CGCATGCGAC TGGTGGTGTC GCATTTCATT GCGGTCGGCC CCATTCTGCA CAGCACCGAC
CTCATCGCGA CCGTGCCGCA GCGTTTTGCC GTTCGCTGCG AAGTGCCTTT TGGTCTGACG
ACATCCCCGC ACCCGGCCAA GCTGCCCGAC ATCGCCATCA ACCTGTTTTG GCATGCCAAG
TACAACCGGG ATCCGGGCAA CATGTGGCTA CGTCAGTTGT TCGTCGAGCT TTTCTCTGAA
GCATAA
|
|---|
| Protein sequence | MDLRDIDLNL LVVFNQLLLD RSVSTAGEKL GLTQPAVSNS LKRLRAALKD DLFLRTSKGM
EPTPYALHLA EPVVYALNTL QTALTTRDSF DPFASTRTFN LAMTDIGEMY FMPPLMEALA
QRAPHIQIST LRPNAGNLKE DMESGAVDLA LGLLPELQTG FFQRRLFRLR YVCMFRKDHP
SAKSPMSLRQ FSELEHVGVV ALNTGHGEVD GLLERAGIKR RMRLVVSHFI AVGPILHSTD
LIATVPQRFA VRCEVPFGLT TSPHPAKLPD IAINLFWHAK YNRDPGNMWL RQLFVELFSE
A
|
|---|
| |