| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3050 |
|---|
| Symbol | |
|---|
| ID | 4670578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 3218129 |
|---|
| End bp | 3219667 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639840097 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_987257 |
|---|
| Protein GI | 121595361 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.985644 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATTCAT ATGAAGACCG CATCCGAGCG GTCACGCTCT ACATCAAGCT GGGCAAGCGC
ACCGGGGCGA CTATCCGCCA GTTGGGCTAC CCGACGAAGA ACTCTTTGAA GAGCTGGCAT
GAGGAGTACG AGCGGCGCCT GGACCTGTCG TCCGGCTACG TGCGCTCAAA GCCGAAGTAT
TCTCAAATTC AGAAGGAGCA GGCTGTCAAA CACTACGCCG AGCACGGGCG CTGCATCGCC
TCCACGGTCA AGGCGTTGGG CTATCCGTGC CGCGATTTGC TGCGTGCCTG GATTGATGAA
CTGGACCCCA ACTCCCGGCA GCGCGTTGTC GGCAGGGCCG TCAGTGCACC TCGGCCGCCG
CAACTGAAGA AGCTGGCGGT CCTCGAACTG TGCACTCGTG AGGGAAGTGC GCAGGTGGTT
GCTCAGAAGC TTGGTGTGAG CAGGCCGACG TTGTACAACT GGAAGAACCA GCTTCTGGGA
CGTGAGGCAC CCGCATCCAT GAAACACACC AATCAGTCCC CACGGGCTCA AGAGCGCGAC
GAGCTCGAGC GCGAGGTTGA TGCGTTGCGC CGCGAAGTCA GGCAACTGCG CCTTGAGCAG
GACCTCTTGA ACAAGGCCAA TGAACTGTTA AAAAAAGGCC TGGGCGTCGA TCTGCAGCTC
CTGTCCAACC GGGAGAAGAC ACTGCTGATT GACGCCCTCA AGGAGCACTA TGACTTGCCA
GAGCTCCTTG GACAGTTGGG TCTTGCACGT AGCTCGTACT TCTACCATCG GGCCCGCGCA
GCGGTGGGTG ACAAGTACCT CCAAGTGCGT CAGTCCATCA CCGAGATCTT CGAGTCGAAC
CACCGTTGCT ACGGCTACCG CAGGCTACAG GCCTCGCTGA CCAGGCAGCA GGTCAACATC
TCGGAGAAGG TGGTGCAGCG GCTGATGAAG CAGGAGCGCC TGGTTGTTCC AATGCACAAG
AAGCGCAGAT ACGCCTCGTA CCTGGGGGAG ATCAGTCCAG CACCAGAGAA CATCATCAAC
CGCGACTTCC AGGCTGCGGC ACCCAATGAG AAGTGGCTCA CGGACATCAC AGAGTTCCAG
ATCCCCGCCG GCAAGGTTTA CCTGTCGCCG ATCATCGATT GCTTCGACGG CATGGTGGTG
AGCTGGACCA TTGGCACGAG CCCCGACGCT GAGCTGGTCA ATACCATGCT GGATGCAGCC
ATCGAGACGG TGACGGACAC CGCTGACCGG CCTGTGGTCC ACTCCGACCG CGGCGGCCAC
TATCGCTGGC CAGGCTGGCT ATCAAGAATG AGCGATGCCA ACCTCATCCG CTCGATGTCC
CGCAAGGCCT GTTCTCCGGA CAATGCGGCT TGCGAAGGCT TCTTCGGTCG CCTCAAAAAC
GAACTGTTCT ATCCTCGGGA CTGGAAGGGC ACGACCATCG AGCAGTTCAT TGAAGTGGTC
GACTCGTACA TCCGCTGGTA CAACGAGAAG CGGATCAAGA TCTCCCTTGG CTCTCTCAGC
CCCATCGAAT ACCGGGTGAG CCTTGGACTT GCGGCATAA
|
|---|
| Protein sequence | MYSYEDRIRA VTLYIKLGKR TGATIRQLGY PTKNSLKSWH EEYERRLDLS SGYVRSKPKY
SQIQKEQAVK HYAEHGRCIA STVKALGYPC RDLLRAWIDE LDPNSRQRVV GRAVSAPRPP
QLKKLAVLEL CTREGSAQVV AQKLGVSRPT LYNWKNQLLG REAPASMKHT NQSPRAQERD
ELEREVDALR REVRQLRLEQ DLLNKANELL KKGLGVDLQL LSNREKTLLI DALKEHYDLP
ELLGQLGLAR SSYFYHRARA AVGDKYLQVR QSITEIFESN HRCYGYRRLQ ASLTRQQVNI
SEKVVQRLMK QERLVVPMHK KRRYASYLGE ISPAPENIIN RDFQAAAPNE KWLTDITEFQ
IPAGKVYLSP IIDCFDGMVV SWTIGTSPDA ELVNTMLDAA IETVTDTADR PVVHSDRGGH
YRWPGWLSRM SDANLIRSMS RKACSPDNAA CEGFFGRLKN ELFYPRDWKG TTIEQFIEVV
DSYIRWYNEK RIKISLGSLS PIEYRVSLGL AA
|
|---|
| |