| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3046 |
|---|
| Symbol | |
|---|
| ID | 4670988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3214481 |
|---|
| End bp | 3215617 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639840095 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_987255 |
|---|
| Protein GI | 121595359 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.343471 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCACG ACGCCGTGTA TTCCGGAATC TATGCCGCAG CCAGCGGCCG GCTCGATTGG
CAGGTTGCAT TGAAAAACGT GGCCGAGTTG CTCGGCCTGC TCTTCGTGCA GGTGCTTGGC
ATCGACAAGC ACAACGGCCA ATTGGTCTTC AGCAGCCATG GCGGCCACGT TTCCGCGCAA
GCTGCGCTCG ACTACTTTCG GCACTACAAC AGCATCGACC CTCGGGTGGC TCTGGCGATG
TCCACGCCTA CGGACGAGTG GATGCACTGC CACCACCATC TGGACGATGT CTACGTGGCG
CAGAGTGAGT TCTACCAGGA TTTTTTGATT CCACTCGGCG GCCGTTATGT CGCTAGCACG
CGGCTGCTGG ACGAGAACTC GGTGCAGTTT TATGTCGCTT TCTCACGCGG ATTTGGCAGC
GAGCCGCTTG GGCAGACCGA GTTCGGTTTG ATGCACCAGT TGAAGCACCA CTTCACCGAG
GCGTTCCGCA ACTTGGTGCA CCTGCGTGAA ACGTATGCGG AACTCGGAAT GGCGCGCGAA
CTACTGGGCC AGTTCGCCTT TCCGATGCTG CTCGTGGACG AGATGGGCGC CATCTGGCAC
CGCAATGCGA TGGCGCGGCA ATTGCTGTTG CTCGGCGACC CGGTCGGAGA GCGACAGGGC
TACCTGACCT GCGGCAGTGC AATAGGACAA AAGGCGCTGG CCGACGCTCT GCACAGCCTG
CAGCTTGACG CTGCTACGGC CTCGGCCGCC GCCGCCCCAC GCCGCAAGGC CATCGCATTG
CCAACGACCG ACGGTCGTCG CTTTCTGGCT TTCGTGAGCG CGGTGAGGCC GGACACGGCT
ATGGGCGCTT TCGGTCGCGC GCCACGCGCT CTCGTGATTC TGCACGACAC GAGGCATTAC
TCAACCCGCA CCCAGTTCGA TCCACTGATC CTCGGAGAGT GTTTCGGTCT GACACCGGCC
GAGGCACGCG TGGCGATGCA GGTGGCCGCC GGCGCAAACC CCAAGCAGAT CGCACTGCGC
AGCGGCGCGG CAGTCGCCAC AGTCAGGACG CAGCTTCAGT GCGTAATGGC CAAGACCGAG
GTCGAGCGCC AGACCGATCT GGTGCGCGTT TTGATGGCGT TGCCAATCCG TCGTTAG
|
|---|
| Protein sequence | MHHDAVYSGI YAAASGRLDW QVALKNVAEL LGLLFVQVLG IDKHNGQLVF SSHGGHVSAQ
AALDYFRHYN SIDPRVALAM STPTDEWMHC HHHLDDVYVA QSEFYQDFLI PLGGRYVAST
RLLDENSVQF YVAFSRGFGS EPLGQTEFGL MHQLKHHFTE AFRNLVHLRE TYAELGMARE
LLGQFAFPML LVDEMGAIWH RNAMARQLLL LGDPVGERQG YLTCGSAIGQ KALADALHSL
QLDAATASAA AAPRRKAIAL PTTDGRRFLA FVSAVRPDTA MGAFGRAPRA LVILHDTRHY
STRTQFDPLI LGECFGLTPA EARVAMQVAA GANPKQIALR SGAAVATVRT QLQCVMAKTE
VERQTDLVRV LMALPIRR
|
|---|
| |