| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3012 |
|---|
| Symbol | |
|---|
| ID | 4674583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3178522 |
|---|
| End bp | 3180915 |
|---|
| Gene Length | 2394 bp |
|---|
| Protein Length | 797 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639840062 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_987222 |
|---|
| Protein GI | 121595326 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0489] ATPases involved in chromosome partitioning
[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAAG ATCAACAGCC ATCAAACCCC GAGCGTTTGC CTGCCCACCA CATCGGTCAA
CCCACACAGC AGGCTCTGGC CATGCGTGGC AACTACGCCT TGGGCATGTC TGCCGAGGGC
CGGGGTGGCG AGCCAGAAGC CGACGACGAC ACCATTGATC TGCGCGACAT ATGGCGACTG
GTTGTAAAGC ACAAGTGGCT GCTGGTGTCG ATGGCTACGG TGGGTTTGCT GGCCGCCCTG
CTACTGAGCT TTATCCGCAC GCCGCTGTAT CTTGCAACCG CAACGGTGCA GGTGGACAAG
CGCGCCGCTC GCGTAGTGCA GTTCGGTCAG GAGGCCGACG CCAGCGCTGA GCTGGACGAC
CGCACCGGCA TGGGCACGCA GTTGGAGCTG CTCAAAAGCC GGGTACTGGC CGAGCGGGTG
ATCGACGAGT TGCGGCTAGA CCGGCAAGGT TTGCCTCAAT TGCCGCCGAC AAACAATGCA
CTGGGAGCCG AGGAAGAAGT TGACCCCCTC CAGGAAGAAG CTGCCAATAC GGGCTGGATG
GCGGTGGCCA GCAACATGCT GGGCAAGATC AAGCAGAGCT GGGACAAGGT ACGCCAGCCC
GCCACCGACA GCGCCGAGCG CCTGAACCGC GAGGAGGTAA TCGCTGCATT CAACAGAACA
ACGAACGTGG AGTTGGTGCG CAATTCGCGC ATGATCAAGG TGAATGTGGA AAACGCCAAC
CCACAACTGG CGGCGCGCAT TGCCAATTCG GTCACACAGA CATTCATTGC GCTGAACCTG
GAGCGGCGGT TGGAATCTTC GTCCTACGCA AAAACTTTTT TGGAAACTCA GCTGGGCCTG
ACCAAGGCTC GTCTTGAAGA ATCGGAGCGA AAACTTAATC AGTTTGCACG CGATCAAAAT
ATTTTGACGC TGGATGAAAA AACCAATGTA ATCAACCAAA CGTTTACTGA TTTTTCTTCG
GCGCTTGCAA AGGCGGAACA AGAGCGGTTC AAGGCCGAGT CGGAATACGA AACAATGCGC
AAAACGCCTG ACACTGCCCG CCAGGTGCTT GAAAGCAAAA CAATTCAGGA TTACAAGTCT
CAGCGCAGCA AACTGGATGC TGAATATGAG CAAAGCGCCA AGATCTACAA GGAAGATTTT
CCAAAGATGC AGCAGCTGCG CGCCCAGATC GACGATCTGG ACTCGAAGAT AAAAACCGAG
GTAAGTAGCA TTTTGGCGTC GGTGAGCAAC TATTTTGAAA TGACCAAACG GCAGGAAGCC
CTGCTGCGCT CGCGCCTGGA GGAAACTCGT CGCCAAATCG TTCAGGGACA AGACCAAAGC
GTCGATTACA ACCTGCTCAA ACGCGAAGTG GACACGAACC GTGAGCTTTA TAACGGCCTG
CTGCAGCAGG TCAAGGAAGT GGGTGTAGCT GGCGGAGTGG AAAGCAACAA TATTCAGGTA
GTGGACAAGG CCGAGGTGCC GCTGTTCCCT TACAAGCCCA AGATTGCGCT GAATACAGCC
ATCGGCTTGC TGGCAGGCTT GGTGCTGGGT TTGGGACTGG TGTTTTTGAT GGAGTCGATG
GACGATTCAA TCAAGTTTGC CGACGAAGTG GAGAAGGTAC TGATGGTGCC GCTGCTGGGG
GTGATTCCGA AAATCAAGCA AAAGGGCGAT CACAGCGGCA GCATGGCCTT GCTGGCGCAA
CATGATCCGC GCGGCCACTT TGCCGAGGCT TACCGCTCGG TGCGCACGGC GCTGCAGTTT
TCGACCTCTG AAGGAGCGCC CCGACGCCTG GTGGTGACCA GCACAGCCAA GAACGAAGGC
AAGTCCACCA CGGCGGTAGC ATTGGCTATC AATTTTGCGC AACTGGGTCT CAAGACAACG
CTTATCGACG CCGACATGCG CAACCCCACG ATCCACAAGT GCATGTCTTT GGGCAACACC
AACGGGCTGT CGAACTTTTT GTCGGGTCAC AGCGCAGCGG CGGAACTACC GCAGGCCACC
GAAGTGCCCA ATCTGCAAAT CATTACGGCA GGACCTATTC CACCCAGCCC GGTAGATCTG
CTGACGGGCC CCAAACTGGG TGAACTGATG GATCTGCTGC AGGCCGATGG CGTGCAGTTC
ATCATTCTGG ACGGTTCGCC CGTATTAGGC TTGGCCGATG CGGTAGTGCT GGGCAACCAG
GTGCCATCGG TTTTGTATGT AGCGCAAGCC AGCCATACGC GTAAGAGCCA CATCAAGGAC
GCGTTCAGGC GCCTTCGTAT GGCAGGCATT GTTCCGCGTG GCGTGGTGCT GACCAAGACA
ACCGCTCAAA ATACAGCGTA TTACACCTAC GACAACTATT ACGGCTACGG CGCTGACCAT
GCAGGCAGCA GCCCGGGAAG CCCAAAAACT GAGCCGCTGT TGCAAAAGGC ATAA
|
|---|
| Protein sequence | MSQDQQPSNP ERLPAHHIGQ PTQQALAMRG NYALGMSAEG RGGEPEADDD TIDLRDIWRL
VVKHKWLLVS MATVGLLAAL LLSFIRTPLY LATATVQVDK RAARVVQFGQ EADASAELDD
RTGMGTQLEL LKSRVLAERV IDELRLDRQG LPQLPPTNNA LGAEEEVDPL QEEAANTGWM
AVASNMLGKI KQSWDKVRQP ATDSAERLNR EEVIAAFNRT TNVELVRNSR MIKVNVENAN
PQLAARIANS VTQTFIALNL ERRLESSSYA KTFLETQLGL TKARLEESER KLNQFARDQN
ILTLDEKTNV INQTFTDFSS ALAKAEQERF KAESEYETMR KTPDTARQVL ESKTIQDYKS
QRSKLDAEYE QSAKIYKEDF PKMQQLRAQI DDLDSKIKTE VSSILASVSN YFEMTKRQEA
LLRSRLEETR RQIVQGQDQS VDYNLLKREV DTNRELYNGL LQQVKEVGVA GGVESNNIQV
VDKAEVPLFP YKPKIALNTA IGLLAGLVLG LGLVFLMESM DDSIKFADEV EKVLMVPLLG
VIPKIKQKGD HSGSMALLAQ HDPRGHFAEA YRSVRTALQF STSEGAPRRL VVTSTAKNEG
KSTTAVALAI NFAQLGLKTT LIDADMRNPT IHKCMSLGNT NGLSNFLSGH SAAAELPQAT
EVPNLQIITA GPIPPSPVDL LTGPKLGELM DLLQADGVQF IILDGSPVLG LADAVVLGNQ
VPSVLYVAQA SHTRKSHIKD AFRRLRMAGI VPRGVVLTKT TAQNTAYYTY DNYYGYGADH
AGSSPGSPKT EPLLQKA
|
|---|
| |