| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2933 |
|---|
| Symbol | |
|---|
| ID | 4672248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3105361 |
|---|
| End bp | 3106218 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639839987 |
|---|
| Product | putative replication initiator and transcription repressor protein |
|---|
| Protein accession | YP_987147 |
|---|
| Protein GI | 121595251 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5534] Plasmid replication initiator protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.54993 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGCC CTCCGCTGCC GCCCCGGCAG CGGCCCGTGC TGGAGCGCGA ACAGCTCGAC
CTGTTCCGCG CCTTGCCGGG CGACATGGCG CCGCGCGACA GCCAGGACTT GATGGCCTTT
CCGTTCTTCT CGCTGGCGAA GTCGCGGCGC GTTGCGCCGA TCGACTTCCG CGCCAGCGGC
ATCACGATCC GCGTGGAGGG CACGCAGGAG CATGGCATCG CCACGATCTG GGACGCGGAC
GTGCTGATCT GGGCGGCCTC GCAGATCGTA GAGGCGCGCG ACGCGGGCTT GCGCCCGTCG
CGGCTGATGC AGGCCACGCC CTACGAGATC CTGCGCTTCA TCGGGCGCGG TACGTCGCTA
CGCGACTACC AGCGCCTCAA AGCCGCGCTG GATCGTCTGC AATCCACGAC CGTGGCCACG
TCGATCCGCG AGACGAGCGG GCGACGACTG CACCGCTTCT CGTGGATCAA CGAGTGGAAG
GAACTGGCGG ATGCCAAGGG CACGCCGCTG GGTCTCGAAT TGATCCTGCC GGACTGGTTC
TATGCGGGCG TGCTCGATGC CGCTCTGGTG CTGACCATCG ACCCGGCGTA TTTCCGGCTG
ACTGGCGGCA TCGAGCGGTG GCTGTATCGG CTGGTGCGCA AGCATGGCGG GCGACAGCCG
GGCGGCTGGC AATTCGACTT CCAGCATCTG TACCGCAAAT CGGGCAGCGT GGCGCGGTAC
TACGACTTCG CCGCCGACCT GCGGGCGCTG GTAGCGCGGC AAGCCTTGCC TGGCTACCAG
TTGGGCATCG AGTACGTCTC GGGTATTTCC TCGCCGCTGC TGACGTTCCG ACCCGTGCCG
TCCACGGCAC GGGGATAA
|
|---|
| Protein sequence | MSSPPLPPRQ RPVLEREQLD LFRALPGDMA PRDSQDLMAF PFFSLAKSRR VAPIDFRASG
ITIRVEGTQE HGIATIWDAD VLIWAASQIV EARDAGLRPS RLMQATPYEI LRFIGRGTSL
RDYQRLKAAL DRLQSTTVAT SIRETSGRRL HRFSWINEWK ELADAKGTPL GLELILPDWF
YAGVLDAALV LTIDPAYFRL TGGIERWLYR LVRKHGGRQP GGWQFDFQHL YRKSGSVARY
YDFAADLRAL VARQALPGYQ LGIEYVSGIS SPLLTFRPVP STARG
|
|---|
| |