| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2908 |
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| Symbol | |
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| ID | 4672490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 3081945 |
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| End bp | 3084380 |
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| Gene Length | 2436 bp |
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| Protein Length | 811 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639839965 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_987125 |
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| Protein GI | 121595229 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.380632 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC TTGCCGAATA TCGCCAGCGC CCGGCCTTGC TCGCCGACTG GTTGCCCTGG
GCCGGGCTGA TCGCACCGGG CGTCGTCTTG AACAAGGACG GCAGTTTCCA GCGCACGGCC
CGGTTTCGCG GGCCTGACCT CGATAGCGCA ACGCAAGGCG AACTGATTGC CACGTCGGCG
CGCTTGAACA ACGCGCTGCG TCGTATGGGT TCGGGCTGGG CGCTGTTCAT CGAAGCCGAG
CGCCGGCCCG CAGCCGACTA TCCGCACTCG GAGTTTCCCG AGCCGTTGTC GTGGCTGGTG
GACGAGGAAC GCCGCGCTAC GTTCGAGGAC TCGGGCAACC ACTTCGAGAG CGGCTACCAC
CTGACGCTGG TGTACCTGCC GCCCGAGGAA TCACGCGCCC GCGCGGCCGG GATGCTGTAC
GAGAACCGGC CCACCGAAGG CGTGGACTGG CGCGAGCGCC TGACGGCCTT CGTCGCGGAA
ACCGATCGCA TCTTCGACCT GCTCGATGGC GTGATGCCGG AAATCGCGTG GCTGGACGAC
AGCCAGACGC TGACCTTCCT GCACGCCACC ATCTCGACGC GGCGCTGTCG CGTCGGCGTG
CCTGAAGTGC CTTTCCACAT CGATGCGCTG CTGACCGACT CCGCGCTGGT CGGTGGCCTG
GCGCCCATGC TGGGCGGCCA GCACCTGCGC GTGGTGTCGG TGCGTGGCTT CCCGACCTCG
ACTTGGCCGG GGATTCTGGA TGACCTCAAC CGCCTCGGCT TTGGCTATCG CTGGTCCACC
CGGTTCCTCT GCATGGACAA AGCCGATGCG GAAAAGGAGC TGTTCCGCCT GCGCCGCCAG
TGGTTCGCCA AGCGCAAGAA CGTGATCGCG CTGCTGCGCG AAACCATCTT CCAGCAGGAA
ACCCCGCTGG TCGATACCGA CGCCAGCAAC AAATCGGCCG ATGCGGACGC GGCCTTGCAG
GAACTGGGCA GCGATCAGGT GGCCTTCGGG TATGTCACCA CCACGGTGAC GGTGCTCGAT
GCCGAACCGG CGAAGGCCGA CGAGAAGCTG CGCATGGTGG AGCGGGTCAT CCAGGGCCGG
GGCTTCGTGA CGATGCCCGA GGCCTTGAAC GCGGTGGATG CCTGGCTGTC GTCCATTCCC
GGCCATGCCT ACGCCAACGT GCGCCAGCCC ATCGTCTCGA CGCTGAACTT GGCGCACCTG
ATGCCGGTGT CGGCGGTATG GGCCGGCCCC GAGCGCAATA ACCATCTCAA CGGCCCGCCG
CTGATCGTGA CGCGCACCGA CGGCGCGACA CCGTTCCGGC TGGTGACGCA CATCGGCGAC
GTGGGCCACA CGCTGGTCGC GGGGCCGACC GGCATGGGCA AGTCGGTGCT GCTCGCCACC
TTGGCGATGC AGTTCCGGCG CTATCGCGGA TCGCGCATCC TCGCGTTCGA CATGGGCCGC
TCCATCCGGG CAACGGTGCT GGGCCTGGGC GGCGAGCACT ACGACCTCGG TATGGATGGC
GAGATCGCCT TCCAGCCCCT GGCCCGCATC GACCATGAGG GCTATCGGAC GTGGGCCGCC
GAGTGGGTCG AAGGCCGGCT GGTGCATGAA GGCGTGACCG TCGGCCCGGA GGAGAAGGCT
GCCATCTGGT CGGCGCTCGG CAGCCTCGCC GGTGCTCCGC TGGAGCAGCG CACGATGACC
GGCCTGTCGG TGCTGCTGCA ATCGAACGCG CTGCGCCAGG CGCTCGCGCC CTACGTGCTC
GGCGGCGCCC ACGGCAAGCT GCTGGATGCG GATTCGGATC GCCTGGGTTC CGGCGCCGTG
CAGTGCTTCG AGATGGAAGA GCTGATGCAC AGCAAGGCCG CCGTCATGGC CGTGCTGCAC
TACCTCTTTG CCCGGTTCGA TGAACGCTTT GACGGTGCGC CCACGCTGCT GATCCTCGAT
GAGGCGTGGC TGTTTCTCGA TGACCCGGTG TTCGCGGCCC GCATCCGCCA GTGGCTCAAG
ACGCTGCGCA AGAAGAACGT CAGCGTCATC TTCGCCACGC AGAGCCTGGC CGACATCAAG
GATTCGAGCA TCGCGCCGGC CATCATCGAG AGCTGCGCCA GCCGCATCTT CCTGCCCAAC
CCGCAGGCGA CCGAGCCGCA GATCAGGGCT ATCTACGAAG GCTTCGGGCT GAACTCGCGC
CAGATCGAAA TCGTCGCCAC CGCGCAGCCC AAGCGCGACT ACTACTACCA ATCCCGTCTC
GGCAACCGCC TGTTCGACCT CGACCTGGGC GCCGCGACCT TGGCCTTCGC GGGTGCTTCC
ACGCCGCAAG ACCAGCGCGA CATCGACGCG GTGCTCGCCG CTACATCTGC ATCCACCCCG
TTCGCAGCCG CCTGGCTGCG CCACCGCGGC CTGCATTGGG CGGCCGAACT GCTGTCCTCG
TTCCCGTCCA CCCACCCCAA GGAGAACCCA TCATGA
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLIAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA
RLNNALRRMG SGWALFIEAE RRPAADYPHS EFPEPLSWLV DEERRATFED SGNHFESGYH
LTLVYLPPEE SRARAAGMLY ENRPTEGVDW RERLTAFVAE TDRIFDLLDG VMPEIAWLDD
SQTLTFLHAT ISTRRCRVGV PEVPFHIDAL LTDSALVGGL APMLGGQHLR VVSVRGFPTS
TWPGILDDLN RLGFGYRWST RFLCMDKADA EKELFRLRRQ WFAKRKNVIA LLRETIFQQE
TPLVDTDASN KSADADAALQ ELGSDQVAFG YVTTTVTVLD AEPAKADEKL RMVERVIQGR
GFVTMPEALN AVDAWLSSIP GHAYANVRQP IVSTLNLAHL MPVSAVWAGP ERNNHLNGPP
LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAT LAMQFRRYRG SRILAFDMGR
SIRATVLGLG GEHYDLGMDG EIAFQPLARI DHEGYRTWAA EWVEGRLVHE GVTVGPEEKA
AIWSALGSLA GAPLEQRTMT GLSVLLQSNA LRQALAPYVL GGAHGKLLDA DSDRLGSGAV
QCFEMEELMH SKAAVMAVLH YLFARFDERF DGAPTLLILD EAWLFLDDPV FAARIRQWLK
TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCASRIFLPN PQATEPQIRA IYEGFGLNSR
QIEIVATAQP KRDYYYQSRL GNRLFDLDLG AATLAFAGAS TPQDQRDIDA VLAATSASTP
FAAAWLRHRG LHWAAELLSS FPSTHPKENP S
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