Gene Ajs_2905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_2905 
Symbol 
ID4671841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp3079554 
End bp3080888 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content67% 
IMG OID639839962 
Productconjugal transfer protein TrbL 
Protein accessionYP_987122 
Protein GI121595226 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3846] Type IV secretory pathway, TrbL components 
TIGRFAM ID[TIGR02783] P-type conjugative transfer protein TrbL 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGACA TTTCGATCAT TGACCATTTT CTCGATGTCT TCTCGCGCTA CATCGACTCG 
GGCTTCGGGC TGCTGCACGG CGAGGTGGCA TTTCTCACGG CCACGCTGAT CGTCATCGAC
ATGACGCTCG CCGGGCTGTT CTGGGCCATG AGTCATGCCA GCGGCCAGGG CGAGGACGTG
ATCGCCAAGC TGATCCGCAA GGTGCTTTAT GTCGGTGCCT TCGCCTACAT CATCGGCAAC
TTCAACACCT TGGCGAGCAT CGTGTTCCGC TCGTTCGCCG GGCTGGGCCT GACGGCCAGC
GGCTCGACCC TGAGCATGGG TAACTTCTTG CAGCCGGGAC GGCTCGCCAA AGTGGGCATC
GACGCCGGGG CGCCCATTCT TGAGCAGATC AAGGAGATGG CGGGCTTCCC CGAGGTGTTC
ATTCACATCA TGCCCATCGT CGTGCTGTTC TTCGCATGGA TGGTGGTCAT CGTCAGCTTC
TTCGTGCTGG CGGTGCAGCT CTTCGTGACG CTGATCGAGT TCAAGCTGAC CACGCTGGCG
GGCTTCGTGC TGGTGCCGTT CGCCCTCTGG AACAAGACGG CGTTCCTGGC CGAGAAGGTG
TTGGGCAACG TGGTGTCCTC GGGCATCAAG GTTCTGGTGC TGGCCGTCAT CGTTGGCATC
GGCTCGGGGC TGTTCTCCGA GTTCAACATA CCGGCCGGTT CGGAGCCTTC GATCGACCGG
GCGTTGGTCA TCATGCTGGC CTCGCTCGCC ATGCTGGCCC TGGGCATCTT CGGGCCGGGC
ATTGCGACTG GGCTGGTGTC CGGTGGCCCG CAGCTCGGCG CGGGCGCGAT GGCTGGTGCT
GCTATCGGCG CAGCCGGAAC CGCCGTGGCA GTCGGTGCCG CGGCTACGGG CGTCGGCAGT
GCTGTGGCGG CTGGGGCACG CATGGCACCC GCCGTCGCCC GCTCGATGGC ATCGACGGCC
AGCAGCGCCA GGTCGGCGTA CCAGGCGGGC TCCGCCTCGG CCGGTGGTGG CCTCAAGGGC
GCCGCCGCTG GTGTGGGCAA TGTGGCCAAG ACCGGCGCGC AGGCGGCCGG GCAGAAGGTG
GCCGACGGGG CGCGCTCGAT GAAAGAGCGC ATGGCGGCGG CTTTTCGGCC TGACGACACG
CCGGCATCCG GCGCCGCACC CGCCGGGCCT GACGCTGCCG GCTCATCTCC GTCCGCCGAG
CAACCCGCCT GGGCCGAGCG CCTGCATCGC AAGCAGCAGC TTACCCATGC CGCAACCACC
GCCGCCCACA CGCTGCGCGG CGGCGATGGT GGCAGCTCCA GCCAGGGGCC GAGCCTGCGC
GATTCCGATT CCTGA
 
Protein sequence
MNDISIIDHF LDVFSRYIDS GFGLLHGEVA FLTATLIVID MTLAGLFWAM SHASGQGEDV 
IAKLIRKVLY VGAFAYIIGN FNTLASIVFR SFAGLGLTAS GSTLSMGNFL QPGRLAKVGI
DAGAPILEQI KEMAGFPEVF IHIMPIVVLF FAWMVVIVSF FVLAVQLFVT LIEFKLTTLA
GFVLVPFALW NKTAFLAEKV LGNVVSSGIK VLVLAVIVGI GSGLFSEFNI PAGSEPSIDR
ALVIMLASLA MLALGIFGPG IATGLVSGGP QLGAGAMAGA AIGAAGTAVA VGAAATGVGS
AVAAGARMAP AVARSMASTA SSARSAYQAG SASAGGGLKG AAAGVGNVAK TGAQAAGQKV
ADGARSMKER MAAAFRPDDT PASGAAPAGP DAAGSSPSAE QPAWAERLHR KQQLTHAATT
AAHTLRGGDG GSSSQGPSLR DSDS