| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2838 |
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| Symbol | |
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| ID | 4672681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 3007308 |
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| End bp | 3008894 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639839895 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_987055 |
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| Protein GI | 121595159 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.207275 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCGCC CCCATTCCTT CACGCCTGTG ACCGCCGCCC TGGCCTGCGC CCTGCTGGCC
GGCTGCAACC TGGCGCCGCG CTACGAAGCG CCGCCGCTGC CCGTGCCGGA CACGGTGGCA
TCGCCCCTGC CCCAGCCGCA AACCGCCGGC GCCGTGGCGC TGCCGGACGG CGGCCCCATG
GCTTGGCAGG AATTCGTGCA GGACGCCCGC CTGCGCACGG TGGTGGAACA GGCCCTGGCG
AACAACCGCG ACCTGCGCGT GGCGGTACTG GCCATCGACA AGGCCCGCGC GCAGTACGGC
GTGGTGCAGG CCGACCGCTT TCCCACGGTG AACGCGGCCG GCGCGGGCAA CCGCAGCCGC
ACCGCCGACG ACCTGACCGC CGCGGGCCGC TCCAACACCA CCAGCCAGTA CAGCGCCACA
CTGGGCTTCA GCAGCTACGA GATCGACTTC TTCGGCCGCG TGCGCAGCCT GAACGATGCC
ACGCTGCAGG AGTTCCTGCG CGTGGCGGAG AACCGCCGCA GCGTACAGCT CAGCCTGGTG
GCCGAGGTGA TCGGCGCCTG GCTCACGCTG GACGCCGACG CGCGCCGCCT GCAACTGGCA
CGCGAGACCC TGCGCACGCG CCAGCAGGCC CTGGAGCTCA CGCAGCGCAG CCATGAACTG
GGCGCCAGCT CGGGCCTGGT GCTGGCGCAG GCCCAGTCGG CGGCCGACAC CGCACGCGTG
GATGCGGCCG CCTTCGTCTC GCAGCTGGCG CGCAGCCGCA ACGCCCTGGC CCTGCTGGTG
GGATCGCCCG TGCCCCCAGC GTTGTTGCCC GCCAGCGTGG CCACCGTGGA AACGGCCATG
CCGGTCACGG CCATGGCGGG CCCGGCCACG CCGGCAACCC AGCCCGCTCC CGGCACCGGT
ACTGCGGACA GTCCTGCCCC CCGGTCCCCT GTCCCCGCGC TGGCCGATCC CGCGGCGCCC
GCAACGGCGC TGCTGGCCGT GCCGGCGGAC GTTCCGTCCA GCGTGCTGCT GCGCCGCCCC
GACGTGCGCG CGGCCGAGCA TGCACTGCAG GGCGCCACGG CCAATATCGG CGCGGCACGC
GCGGCGTTCT TTCCGTCGAT CACGCTCACG GCCTCGGTGG GCACGGCCAG CAATGCGCTG
TCGGGCCTGT TCGAGGGCGG CAACGGCACC TGGGCGTTCG CGCCGCAGAT CCGCCTGCCG
ATCTTCGACG CCGGCCGCAA CCAGGCCAAC CTGCGCGTGG CCGAGGTGAC GCGCGACACC
GCCGTGGCCC AATACGAGAA GGCCATCCAG ACTGCCTTCC GCGAGGTGTC CGACGCGCTG
GCCGAGCGCG CCACGCTCAC CGAGCGCCTG CAGGCGCAGG GCTCGCTGGT GCAGGCCACA
CAGCGCACGC TGCAGCTGTC GGATGCACGC TTTCGCCTCG GTGCGGACAA CTACCTCGCC
GTGCTGGACG CGCAGCGCAC GCTGTATGCC GCACAGCAGG CGCAGATCAC GCTGCAACTG
GCCGAGCAGG TCAACCGCGT GACGCTCTAC AAGGTGCTGG GCGGCGCCTG GACGGACCCA
ACACCACCGC CGGCAGGCGG CTCCTGA
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| Protein sequence | MTRPHSFTPV TAALACALLA GCNLAPRYEA PPLPVPDTVA SPLPQPQTAG AVALPDGGPM
AWQEFVQDAR LRTVVEQALA NNRDLRVAVL AIDKARAQYG VVQADRFPTV NAAGAGNRSR
TADDLTAAGR SNTTSQYSAT LGFSSYEIDF FGRVRSLNDA TLQEFLRVAE NRRSVQLSLV
AEVIGAWLTL DADARRLQLA RETLRTRQQA LELTQRSHEL GASSGLVLAQ AQSAADTARV
DAAAFVSQLA RSRNALALLV GSPVPPALLP ASVATVETAM PVTAMAGPAT PATQPAPGTG
TADSPAPRSP VPALADPAAP ATALLAVPAD VPSSVLLRRP DVRAAEHALQ GATANIGAAR
AAFFPSITLT ASVGTASNAL SGLFEGGNGT WAFAPQIRLP IFDAGRNQAN LRVAEVTRDT
AVAQYEKAIQ TAFREVSDAL AERATLTERL QAQGSLVQAT QRTLQLSDAR FRLGADNYLA
VLDAQRTLYA AQQAQITLQL AEQVNRVTLY KVLGGAWTDP TPPPAGGS
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